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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaatgtcagcttttcttctagccatttattttatagtttgggcttgcttagaaaattgaaatatcttgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G14716.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14716.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G165998_T01 (Zea mays), 3'ss of exon 5
------------gtgcaatgtcagcttttcttctagcca---tttattttatagtt-tgggcttgcttagaaaattgaaatatct-----tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG
             |    | | |  | ||||   | | |        |  |||     |    ||| | |   |||    |  ||       ||   ||||||||||| ||||| |||||||| || || ||||||||||||||||| || || |||||||| || || ||
tcttctgttactttcttgtcttaagtcttctgtaaacaagaaccagctaaataacgacgctgctgcattgtggattttttttcctgctatgattcctcagGCAATGCGTCTATTTGTGGGTGAGCCTGTCTGGACACCATACAATCGTCCGCATGACCATCTCCCGGCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125271657|gb|EL285742.1|EL285742
EST:     CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTG
genomic: CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTG
EST: gi|116403021|gb|EG445613.1|EG445613
EST:     CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
EST: gi|124882644|gb|EH961546.1|EH961546
EST:     CTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCG
genomic: CTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCG
EST: gi|125087037|gb|EL146309.1|EL146309
EST:     TGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: TGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
EST: gi|125014829|gb|EL087098.1|EL087098
EST:     CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTG
genomic: CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTG
EST: gi|125022400|gb|EL094669.1|EL094669
EST:     ACAACTATAACAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: ACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
EST: gi|19741175|gb|AU226528.1|AU226528
EST:     CTGT-GACTCTGACAACTATATC-AG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: CTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
EST: gi|125265659|gb|EL279744.1|EL279744
EST:     CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCG
genomic: CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCG
EST: gi|124819530|gb|EH904396.1|EH904396
EST:     TCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: TCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatttattttatagtttgggcttgcttagaaaattgaaatatcttgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG
                                          tcttgtt  CT-rich tract
                          ttagaaaattgaaata  TA-rich tract