1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttttcaagcttcttctcgcttttcaataacagcgtatatttcctctgaactcttttttggggttgtcttagATGACCACAAAACCAAGGGAAGTGGATTAGCTCCATGGCCAGCTCGGTTAACCTCTCCTCCTCCCAGACTTGCTGATTTTGGATATTCAACGGGCATGTT
species | Arabidopsis thaliana |
transcript | AT4G14360.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAAGCTTGCATTACTTCTTACAGTGACC TEST: gi|124797499|gb|EH887178.1|EH887178
genomic: GGAAGCTTGCATTACTTCTTACAGTGACCgtaagttttc ... gttgtcttag-
EST: GGAAGCTTGCATTACTTCTTACAGTGACC TEST: gi|47831830|gb|CK121514.1|CK121514
genomic: GGAAGCTTGCATTACTTCTTACAGTGACCgtaagttttc ... gttgtcttag-
EST: TGCTGTGTGGGGCGTAAACATGGAAGCTTGCATTACTTCTTACAGTGACC ATGACCACAAAACCAAGGGAAGTGGATTAGCTCCATGGCCAGCTCGGTTAAEST: gi|86079584|gb|DR375341.1|DR375341
genomic: TGCTGTGTGGGGCGTAAACATGGAAGCTTGCATTACTTCTTACAGTGACCgtaagttttc ... gttgtcttagATGACCACAAAACCAAGGGAAGTGGATTAGCTCCATGGCCAGCTCGGTTAA
EST: GTAAACATGGAAGCTTGCATTACTTCTTACAGTGACC ATGACCACAAAACCAAGGGAAGTGGATTAGCTCCATGGCCAGCTCGGTTAA
genomic: GTAAACATGGAAGCTTGCATTACTTCTTACAGTGACCgtaagttttc ... gttgtcttagATGACCACAAAACCAAGGGAAGTGGATTAGCTCCATGGCCAGCTCGGTTAA
cgcttttcaataacagcgtatatttcctctgaactcttttttggggttgtcttagATGACCACAAAACCAAGGGAAGTGGATTAGCTCCATGGCCAGCTCGGTTAACCTCTCCTCCTCCCAGACTTGCTGATTTTGGATATTCAACGGGCATGTT
caataac putative branch site (score: 2)
ttgtctt putative PPT
tatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttcaagcttcttctcgcttttcaataacagcgtatatttcctctgaactcttttttggggttgtcttagATGACCACAAAACCAAGGGAAGTGGATTAGCTCCATGGCCAGCTCGGTTAACCTCTCCTCCTCCCAGACTTGCTGATTTTGGATATTCAACGGGCATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT