Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagtttacttgtttccctcccagtttagcgttgatattgcattgtcttcttacctaggttttgtagttgactgctaagttttgcaacttgcagGTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G14147.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14147.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G11740.1 (Glycine max), 3'ss of exon 4
-gtaagaagttta-cttgtttccctcccagtttagcgttgatattgcattgtcttct-tacctaggttttgtagttgactgctaagttttgcaacttgcagGTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAG
 ||   |  | |  |||  |    ||    ||||   ||  |     | || ||| |  | | | | ||| | |   | ||       |||    || |||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||| | |||||||| ||||||
ggtggtagttgtgtcttaataatttcttcttttactcttccttcctaagtgccttttgcatccatgctttatggaaaaatgtgtgcaattgttg-ttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG

upper sequence: AT4G14147.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA05G28650.1 (Glycine max), 3'ss of exon 4
-gtaa--gaagtttacttgtttccctcccagtttagcgttgatattgcattgtcttcttacctaggttttgtagttgactgctaagttttgcaacttgcagGTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAG
 ||||  |    ||| |  ||||         |   | ||  ||  |   | | ||   | | | | ||| | |   | ||       |||    || |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||| | |||||||| ||||||
ggtaattgtgtcttaataatttcttctgttactctaccttcctaa-gtgatctttttgcatccatgctttatggaaaaatgtgtgcaattgttttttccagGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG

upper sequence: AT4G14147.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv05s0029g01310.t01 (Vitis vinifera), 3'ss of exon 4
-gtaagaagtttac-ttgtttccctcccagtttagcgttgatattgcattgtcttcttacct-aggttttgtagttgactgctaagttttgcaacttgcagGTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAG
  |||    | ||| ||||||      |  ||     |  |   || ||     |   |  | | |  ||||| ||   |  |     ||   | || |||||||| || || || ||||| |||||||| || || |||||||||||||| |||||||| || ||||||||||||
tataaatgttgtacattgttttgtgttcttttacatctaaaccatggatgtcacttgcatttcaaggattgtatttttatttttgaaattatcattt-cagGTTTTGATTTGTCGGAATGAAGCTGAAAAATGCTTGATAGAAACATCTATCAATTCACTGCGAATAAGCCTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgtcttcttacctaggttttgtagttgactgctaagttttgcaacttgcagGTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAG
                                    taagtttt  TA-rich tract