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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaaccaaaatataatcttttggagcgttttaaccaaagtttaaacaatttgcattctattgaaactgtcttggtgatttcagGGGAAGTCTCTAAGAGCAGGACCTCAGATGATCCAACTAAGCCTAGATGGGAAAAGATTATATGCGACAAACTCGCTATTTAGCGCATGGGACCGTCAGT

Basic information

species Arabidopsis thaliana
transcript AT4G14040.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125279590|gb|EL293675.1|EL293675
EST:     CTGTTGGAGAAGATGGTAATACTTACCAATTCGATGTTCCTCAGATCAAG                         GGGAAGTCTCTAAGAGCAGG
genomic: CTGTTGGAGAAGATGGTAATACTTACCAATTCGATGTTCCTCAGATCAAGgtttgtaacc ... gtgatttcagGGGAAGTCTCTAAGAGCAGG
EST: gi|125069817|gb|EL135457.1|EL135457
EST:     CTGTTGGAGAAGATGGTAATACTTACCAATTCGATGTTCCTCAGATCAAG                         GGGAAGTCTCTAAGAGCAGGACCTCAGATGATCCAACTAAG
genomic: CTGTTGGAGAAGATGGTAATACTTACCAATTCGATGTTCCTCAGATCAAGgtttgtaacc ... gtgatttcagGGGAAGTCTCTAAGAGCAGGACCTCAGATGATCCAACTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaccaaagtttaaacaatttgcattctattgaaactgtcttggtgatttcagGGGAAGTCTCTAAGAGCAGGACCTCAGATGATCCAACTAAGCCTAGATGGGAAAAGATTATATGCGACAAACTCGCTATTTAGCGCATGGGACCGTCAGT
 ttttaac  putative branch site (score: 2)
       aaagtttaaacaattt  TA-rich tract