Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtagtttctgattcattttcattacttcttgttttggttcttataattctatgactaaccaaccagcaataacaacttgttttagGTTGTTATATCGGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAAATGCCGGGGCTAATCACCGACTTCTTGATCTCCCTCGATGACCGATTTA

Basic information

species Arabidopsis thaliana
transcript AT4G14030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14030.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G11400.1 (Glycine max), 3'ss of exon 5
----gtaagtgtagtttctgattcattttcattacttcttgttttggttc--ttataattctatgactaacca-accagcaataacaacttgtttt--agGTTGTTATATCGGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAAATGCCGGGGCTAATCACCGACTTCTTGATCTCCCTCGATGACCGATTTA
      |     | ||| |  |    | |  |      ||||   | |||    |   |   ||||  ||  | ||   ||      |||   |||  ||||||  ||||| || ||||| ||||||||  |||||||||| |||||||||||||| ||||| || || || ||  |||| || || ||||| || ||| 
atatccatactcattttgtattgtcatctggtatgcgtttgtgcagcttcaaccaaggtataatgatcaataatacttacacactagactgactttgcagGTTGCAATATCAGTGAAACCATTGAAAGTGCAAAACTGGATTCTTCCAGAAATGCCTGGGCTTATAACTGATTTTCTGATATCTCTTGATGATCGGTTTC

upper sequence: AT4G14030.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA05G28400.1 (Glycine max), 3'ss of exon 5
----gtaagtgtagtttctgattcattttcattacttcttgttttggttc--ttataattctatgactaacca-accagcaataacaacttgtttt--agGTTGTTATATCGGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAAATGCCGGGGCTAATCACCGACTTCTTGATCTCCCTCGATGACCGATTTA
      |     | ||| | |   | | |   || |  ||||   | |||    |       ||||  ||  | ||   ||      |||   |||  ||||||  ||||| || ||||| ||||||||  |||||||||| |||||||||||||| ||||| || || || ||  |||| || |||||||| || ||| 
atattcatactcattttgtaaagtagtctggctagtgtttgtgcagcttcaaccaaggcataatgatcaataatacttacagactagactgactttgcagGTTGCAATATCAGTGAAACCATTGAAAGTGCAAAACTGGATTCTTCCAGAAATGCCAGGGCTTATAACTGATTTTCTGATATCTCTCGATGATCGGTTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125168449|gb|EL193123.1|EL193123
EST:     GTAATATGATAAGATTTT-CAAGAACAGTGATGAAACATGGAGCCATGAG                         GTTGTTATATCGGTTAAA
genomic: GTAATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAGgtaagtgtag ... cttgttttagGTTGTTATATCGGTTAAA
EST: gi|125162359|gb|EL189129.1|EL189129
EST:     GTAATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAG                         GTTGTTATATCGGTTAAA
genomic: GTAATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAGgtaagtgtag ... cttgttttagGTTGTTATATCGGTTAAA
EST: gi|124931071|gb|EL008464.1|EL008464
EST:     AATATGATAAGATTTTTCTAAGTAACAGTGATGAAACATGGAGCCATGAG                         GTTGTTATATCGGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAA
genomic: AATATGATAAGATTTTTC-AAG-AACAGTGATGAAACATGGAGCCATGAGgtaagtgtag ... cttgttttagGTTGTTATATCGGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAA
EST: gi|47831973|gb|CK121657.1|CK121657
EST:     GTAATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAG                         GTTGTTATATCGGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAA
genomic: GTAATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAGgtaagtgtag ... cttgttttagGTTGTTATATCGGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttggttcttataattctatgactaaccaaccagcaataacaacttgttttagGTTGTTATATCGGTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAAATGCCGGGGCTAATCACCGACTTCTTGATCTCCCTCGATGACCGATTTA
                                             cttgtttt  CT-rich tract
       ttcttataattctat  TA-rich tract