1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgtagatggaagcctgtttattgtttttagaagcgaaagtaaagattactggagaccttcaacgatatgtaactactactgtggtataaatatctgcagGTGCTTATCTTGGTTTGACTGGTAAAAGGATCTCCGCGCCATCAGACGCACTGTTCGTTGGTCTTGGGACGCATTATGTACCATCTGAAAAGCTAGCTTC
species | Arabidopsis thaliana |
transcript | AT4G13360.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTCGGGTTTTCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTG GTGCTTATCTTGGTTTGACTGGTAAAAGGNTCTCCGCGCCEST: gi|125036662|gb|EL108931.1|EL108931
genomic: TGTCGGGTTTTCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTGgtatgttcat ... atatctgcagGTGCTTATCTTGGTTTGACTGGTAAAAGGATCTCCGCGCC
EST: TGTCGGGTTTTCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTG GTGCTTATCTTGGTTTEST: gi|164124770|gb|ES163169.1|ES163169
genomic: TGTCGGGTTTTCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTGgtatgttcat ... atatctgcagGTGCTTATCTTGGTTT
EST: TCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTG GTGCTTAATCTTGGTTTGACTGGTAAAAGG
genomic: TCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTGgtatgttcat ... atatctgcagGTGCTTA-TCTTGGTTTGACTGGTAAAAGG
attactggagaccttcaacgatatgtaactactactgtggtataaatatctgcagGTGCTTATCTTGGTTTGACTGGTAAAAGGATCTCCGCGCCATCAGACGCACTGTTCGTTGGTCTTGGGACGCATTATGTACCATCTGAAAAGCTAGCTTC
atgtaac putative branch site (score: 3)
tataaatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtagatggaagcctgtttattgtttttagaagcgaaagtaaagattactggagaccttcaacgatatgtaactactactgtggtataaatatctgcagGTGCTTATCTTGGTTTGACTGGTAAAAGGATCTCCGCGCCATCAGACGCACTGTTCGTTGGTCTTGGGACGCATTATGTACCATCTGAAAAGCTAGCTTC
- - - - - - - - - - - - - - - - - - -aagtaaa
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