Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacagttacaaatctgtcttcttgttgtggagatggatgtgttacattgattgattgtgtttttttaatctgtcagTAATGTTGAGCGGTTAAGGGACTTCATCAGACATGTGTATGTAAATAAAAGGTATACGAATGAGAAGAATGATGATAAGTCTCCAAGTGAGACACGTAGT

Basic information

species Arabidopsis thaliana
transcript AT4G13350.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423228|gb|EG465820.1|EG465820
EST:     ATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTGCCTGACGGAAG                         TAATGTTGAGCGGTTAAGGGACTTCATCAGACATGTGTATGTAAATAAAAG
genomic: ATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTGCCTGACGGAAGgtattacagt ... aatctgtcagTAATGTTGAGCGGTTAAGGGACTTCATCAGACATGTGTATGTAAATAAAAG
EST: gi|116423227|gb|EG465819.1|EG465819
EST:     ATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTGCCTGACGGAAG                         TAATGTTGAGCGGTTAAGGGACTTCATCAGACATGTGTATGTAAATAAAAG
genomic: ATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTGCCTGACGGAAGgtattacagt ... aatctgtcagTAATGTTGAGCGGTTAAGGGACTTCATCAGACATGTGTATGTAAATAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgtggagatggatgtgttacattgattgattgtgtttttttaatctgtcagTAATGTTGAGCGGTTAAGGGACTTCATCAGACATGTGTATGTAAATAAAAGGTATACGAATGAGAAGAATGATGATAAGTCTCCAAGTGAGACACGTAGT
                                         ttttaat  putative branch site (score: 3)
                                      ttttttta  CT-rich tract
                                attgtgtttttttaat  TA-rich tract