1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtactcaaattacacaaaggactttgtgttatccggtcctcttcagattttcagtatgctaatcatatttgcttctggatatttgccctttctcttttttttttttatgagtttttctttcgctcttcagGTACTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATG
species | Arabidopsis thaliana |
transcript | AT4G12590.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTGAGTAGTCGTTCCTA GTACTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGGEST: gi|86079343|gb|DR375100.1|DR375100
genomic: TGTGAGTAGTCGTTCCTGgtaagtactc ... cgctcttcagGTACTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGG
EST: GGCATTGACTTGAGCACTGTCGATGTTAGCTATGTGAGTAGTCGTTCCTG GTACTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGG
genomic: GGCATTGACTTGAGCACTGTCGATGTTAGCTATGTGAGTAGTCGTTCCTGgtaagtactc ... cgctcttcagGTACTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGG
tggatatttgccctttctcttttttttttttatgagtttttctttcgctcttcagGTACTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATG
ttgccctttctctttt CT-rich tract
tttctctttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactcaaattacacaaaggactttgtgttatccggtcctcttcagattttcagtatgctaatcatatttgcttctggatatttgccctttctcttttttttttttatgagtttttctttcgctcttcagGTACTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG