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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtcctaaaccgttgtaatcaagtgattgtaaagttgagtactcatagagtttttttttgttatatggcagGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGGAATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTG

Basic information

species Arabidopsis thaliana
transcript AT4G12430.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G12430.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA17G14780.1 (Glycine max), 3'ss of exon 3
--------------------------------------gtaaagtcctaaaccgttgtaatcaagtgattgtaaagttgagtac-tcatagagtt-tttttttgttatatggcagGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGGAATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTG--
                                      || || |  ||||   |  | ||    || || | |  || | ||  ||||| ||   |  ||   | || |  ||||||| | | || ||   |||||||||||| || ||||| ||||||||||| |||||||| ||     ||  |  ||   |   ||||   |||  |||    
gtatctaggatgatcattagttttacatcatttattgagttaaatagtaaatattaattattttttgtttatcagatttactaagtcataaagccatggttacttcatttttcagGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACT--TTGTCCAAAAATCACCCAA

upper sequence: AT4G12430.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv02s0154g00110.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------------------gtaaagtcctaaaccgttgtaatcaagtgattgtaaagttgagtactcatagagtttt-tttttgttatatggcagGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGGAATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTG
                                                          |     |||  |    | ||      || | ||    ||| || |    || || |  | | ||   | ||  |||||||| |||||||||||||||  ||||| ||||| ||||| ||||||||||||||||| |||    |  |        |    ||     |     |  
gtatttgagagaatcttatattcctaatattaagtgttcaaggattttattgcttctttttgccccttcatatgtatatatgtatgttcgtctt-ttgggtgccgtcagcgtctgatctctgcattttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGGAATGGACATCATGGGCCCAGCCAGATACACAGCCTGCAATGACCATTCAA

upper sequence: AT4G12430.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv00s0233g00030.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------------------gtaaagtcctaaaccgttgtaatcaagtgattgtaaagttgagtactcatagagtttt-tttttgttatatggcagGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGGAATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTG
                                                          |     |||  |    | ||      || | ||    ||| || |    || || |  | | ||   | ||  |||||||| |||||||||||||||  ||||| ||||| ||||| ||||||||||||||||| |||    |  |        |    ||     |     |  
gtatttgagagaatcttatattcctaatattaagtgtttaaggattttgttgcttctttttgccccttcatatgtatatatgtatgttcgtctt-ttgggtgccgtcagcgtctaatctctgcattttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGGAATGGACATCATGGGCCCAGCCAGATACACAGCCTGCAATGACCATTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaagtgattgtaaagttgagtactcatagagtttttttttgttatatggcagGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGGAATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTG
                                  tttttttttgttat  CT-rich tract
                            atagagtttttttttg  TA-rich tract