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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatctatggcataatacctgtcaaattaatattgcaattgaggatcaacagtacattcatatgaacaactttgttcttacattcaaatggcatgtttatcttaaagttttaatatgctgtttagGTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGG

Basic information

species Arabidopsis thaliana
transcript AT4G11800.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11800.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA14G08860.1 (Glycine max), 3'ss of exon 4
gtaagttatctatggcataatacctgtcaaattaatattgcaattgaggatcaacagtacattcatatgaacaactttgttcttacatt----caaatggcatgtttatcttaaagttttaatatgctgtttagGTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGG
                                |   |||||| ||    || | ||    |||  ||| ||| | ||| || |  ||||    ||  |   || || || || | || | || |  |     || |||||||| || || ||  | || ||  |  ||||||||||| |||||||  ||||| |||| |||||||| ||||| |||||||| ||||| || ||
-------------------------------ctggcattgcattttcaaatta-catagtattagtatcaaccatttttttttctcattatttcacttaatattttcatttttatgtctgaaaaatcaac--agATGGGCTCTCACTCACCCATTATCTGTTAAAGAATATGAGAAGTTGAAGAAGAAGCAAATGAAGCCTGATTTTTTAGACATGGTTCCATGGTACTCTGG

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA17G36310.1 (Glycine max), 3'ss of exon 4
gtaagttatctatggcataatacctgtcaaattaatattgcaattgaggatca-acagtacattcatatgaacaactttgtt-cttac--attcaaatggcatgtttatcttaaagttttaatatgctgtttagGTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGG
                                |  ||||||| ||    || | | ||||  |   ||| ||| | ||| || || |    ||||  ||  || ||| | || | || | || |  |     || |||||||| || || ||  | || ||  |  ||||||||||| |||||||  | ||| |||| |||||||| ||||| |||||||||||||| || ||
-------------------------------ctggtattgcattttcaaattacatagtat-tgagtatcaaccattttttttctcattatttcacttgatatctttgtttttatgtctgaaaaatcaac--agATGGGCTCTCACTCACCCATTATCTGTTAAAGAATATGAGAAGTTGAAGAAGAAACAAATGAAGCCTGATTTTTTAGACATGGTTCCTTGGTACTCTGG

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 5
gtaagttatctatggcataatacctgtcaaattaatattgcaattgaggatcaacagtacattcatatgaacaactttgttcttacattcaaatggcatgtttatcttaaagttttaatatgctgtttagGTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGG
                ||| || |  |     ||| |||    || | | ||||    |||||        |   ||  || || |||    ||| | |  ||   || |  | | | |||       || |||||||| || || ||| |||||||  |  | |||||| || |||||||  ||||| |||| ||||||||||| |||||||| ||||||||||| ||
-------------tatatagtaaccattgt-ctaagattct--tttaagttcaatcccacattt-------cttattattttttgcatc---atgtcctactt-cattgatatctgactatcaa---cagATGGGCTCTTACTCACCCTTTGTCAGTTAAAGATTATGAGGAGTTGAAGAAAAAGCAAATGAAGCCTGATTTCTTGGATATGGTCCCTTGGTATTCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttcttacattcaaatggcatgtttatcttaaagttttaatatgctgtttagGTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGG
                      atgtttatcttaaagt  TA-rich tract