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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggatctttacttgatgtttatcatctgctcctgtgttcaaagatagaaactattgatttctctcatgtagGTTCCATGTTTTCGGGATTGGACAACGGTCACTAGGATTTAGTGTGCGAGTTGAGTTGAAAACAGGAACTAGAGTTTCA

Basic information

species Arabidopsis thaliana
transcript AT4G11720.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116481172|gb|EG523764.1|EG523764
EST:     ATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTG                         GTTCCATGTTTTCGGGATTGGACAACGGTCACTAGGATTTAGTGTGCGAGT
genomic: ATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTGgtatggatct ... tctcatgtagGTTCCATGTTTTCGGGATTGGACAACGGTCACTAGGATTTAGTGTGCGAGT
EST: gi|116481171|gb|EG523763.1|EG523763
EST:     ATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTG                         GTTCCATGTTTTCGGGATTGGACAACGGTCACTAGGATTTAGTGTGCGAGT
genomic: ATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTGgtatggatct ... tctcatgtagGTTCCATGTTTTCGGGATTGGACAACGGTCACTAGGATTTAGTGTGCGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatcatctgctcctgtgttcaaagatagaaactattgatttctctcatgtagGTTCCATGTTTTCGGGATTGGACAACGGTCACTAGGATTTAGTGTGCGAGTTGAGTTGAAAACAGGAACTAGAGTTTCA
                                   tattgat  putative branch site (score: 3)
                                         tttctctcat  CT-rich tract
                                   tattgattt  TA-rich tract