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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcattctttgttataaaactaaagacatcatgtgaaacgcttggttccttatcactatcttgatatgtgcagTATTGCTGTGGACGCTGACGGCGGCATGCATCAAGACTGGACGGCCTCAAATAGCGAGACGTGCGATTGATCTAATTGAATCACGGCTACACCGAGATTG

Basic information

species Arabidopsis thaliana
transcript AT4G09510.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124997778|gb|EL070047.1|EL070047
EST:     CACAACGGTGGATCTTGGCCAG                         TATTGCTGTGGACGCTGACGGCGGCATGCATCAAGACTGGACGGCCTCAAA
genomic: CACAACGGTGGATCTTGGCCAGgttagcattc ... atatgtgcagTATTGCTGTGGACGCTGACGGCGGCATGCATCAAGACTGGACGGCCTCAAA
EST: gi|86085444|gb|DR381203.1|DR381203
EST:     TGATCCTAAAAACACGAGGTGGAGTTACCACAACGGTGGATCTTGGCCAG                         TATTGCTGTGGACGCTGACGGAGGCATGCATCAAGACTGGACGGCCTCAAA
genomic: TGATCCTAAAAACACGAGGTGGAGTTACCACAACGGTGGATCTTGGCCAGgttagcattc ... atatgtgcagTATTGCTGTGGACGCTGACGGCGGCATGCATCAAGACTGGACGGCCTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaaagacatcatgtgaaacgcttggttccttatcactatcttgatatgtgcagTATTGCTGTGGACGCTGACGGCGGCATGCATCAAGACTGGACGGCCTCAAATAGCGAGACGTGCGATTGATCTAATTGAATCACGGCTACACCGAGATTG
                                          ttgatat  TA-rich tract