1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaagtgtaattctttagtaactagataaagaagtttaactgttttgaatccctatcactgtgatactcatctttgtattgtcttatgaaacttgttcagGATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAG
species | Arabidopsis thaliana |
transcript | AT4G08520.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGG GATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCAEST: gi|86024307|gb|DR320060.1|DR320060
genomic: GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGgtatgctaca ... acttgttcagGATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCA
EST: GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGG GATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAA-GTAGCAATGCEST: gi|86024308|gb|DR320061.1|DR320061
genomic: GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGgtatgctaca ... acttgttcagGATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGC
EST: GAAAACTTGTATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGG GATGGTACTTGAAACAGACGCGAEST: gi|164025633|gb|ES124867.1|ES124867
genomic: GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGgtatgctaca ... acttgttcagGATGGTACTTGAAACAGACGCGA
EST: TCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGG GATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAA-GTAGCAATGCAEST: gi|19875026|gb|AU235857.1|AU235857
genomic: TCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGgtatgctaca ... acttgttcagGATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCA
EST: GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGG GATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTEST: gi|47828401|gb|CK118085.1|CK118085
genomic: GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGgtatgctaca ... acttgttcagGATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGT
EST: GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGG GATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCA
genomic: GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGgtatgctaca ... acttgttcagGATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCA
tgaatccctatcactgtgatactcatctttgtattgtcttatgaaacttgttcagGATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAG
cttgttc CT-rich tract
tttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtgtaattctttagtaactagataaagaagtttaactgttttgaatccctatcactgtgatactcatctttgtattgtcttatgaaacttgttcagGATGGTACTTGAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - -aactaga
- - - - - - - - - - - - - -aaagaag
- - - - - - - - - - - - - - - - - - - - - - -tgaatcc