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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttgcatttttaatctttcactaattttcacttcatttacatgttatggtaattattttgtggagttttttacattatgaactttttctgttttggtgtttttttagataacctattttagagaagatatttatttgactgaataaatttgctctttatgaatattaaaacatttatatacatatgttatgtagGTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAACATCGTTCTTGCTCTTAACCTATGCCAAATACTTAACCTCCGCCAAAAC

Basic information

species Arabidopsis thaliana
transcript AT4G02290.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125201665|gb|EL216619.1|EL216619
EST:     TCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAG                         GTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA
genomic: TCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGgttcttgcat ... tgttatgtagGTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA
EST: gi|164215741|gb|ES118732.1|ES118732
EST:     GCTCCTTTCTCTTCTACTCAGTATACACCAG                         GTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA
genomic: GCTCCTTTCTCTTCTACTCAGTATACACCAGgttcttgcat ... tgttatgtagGTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA
EST: gi|163968455|gb|ES183396.1|ES183396
EST:     GTTATTCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAG                         GTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA
genomic: GTTATTCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGgttcttgcat ... tgttatgtagGTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaataaatttgctctttatgaatattaaaacatttatatacatatgttatgtagGTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAACATCGTTCTTGCTCTTAACCTATGCCAAATACTTAACCTCCGCCAAAAC
               tttatgaatattaaaa  TA-rich tract