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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgttttatatctatcgcttcaaggtttcacaaaaccgtgttcttgattgtctcgttttgttagGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGAACCGCCCACTTCAAAAGCTCTTA

Basic information

species Arabidopsis thaliana
transcript AT4G01330.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124712120|gb|EH803522.1|EH803522
EST:     AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAG                         GTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCG
genomic: AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGgtaatttgtt ... gttttgttagGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCG
EST: gi|125112381|gb|EL163480.1|EL163480
EST:     AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAG                         GTGAATTTGGTTGAGTGGCTGAAAACAATGG
genomic: AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGgtaatttgtt ... gttttgttagGTGAATTTGGTTGAGTGGCTGAAAACAATGG
EST: gi|125079846|gb|EL141674.1|EL141674
EST:     AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAG                         GTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCGAAGGT
genomic: AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGgtaatttgtt ... gttttgttagGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCGAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctatcgcttcaaggtttcacaaaaccgtgttcttgattgtctcgttttgttagGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCGAAGGTCTGAGGAAGTAGTCGATCCAAAAATACCCGAACCGCCCACTTCAAAAGCTCTTA
                                tcttgat  putative branch site (score: 4)
                                         tctcgtttt  putative PPT
                                              ttttgtta  TA-rich tract