1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaccatcttctctccctactgctctagattttccttaaaaacttctcaacttctgcaatgtgaatggagtttttgctgattttttttgcagCGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGTTGAGAATGTGGATGACAATGGAAAGTTTGGATTGAAGGTGTTGAGTTAC
species | Arabidopsis thaliana |
transcript | AT4G00755.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATACTATATATG CGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGTEST: gi|164214126|gb|ES018718.1|ES018718
genomic: CAATACTATATATGgtaccatctt ... ttttttgcagCGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGT
EST: CAATACTATATATG CGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGTEST: gi|19875768|gb|AU236599.1|AU236599
genomic: CAATACTATATATGgtaccatctt ... ttttttgcagCGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGT
EST: TTTCTAGGTCGAGTTCAGACACAAGAAATGGATGGCCAATACTATATATG CGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGT
genomic: TTTCTAGGTCGAGTTCAGACACAAGAAATGGATGGCCAATACTATATATGgtaccatctt ... ttttttgcagCGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGT
aaaaacttctcaacttctgcaatgtgaatggagtttttgctgattttttttgcagCGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGTTGAGAATGTGGATGACAATGGAAAGTTTGGATTGAAGGTGTTGAGTTAC
tgctgat putative branch site (score: 3)
ttttttttgc CT-rich tract
tgatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccatcttctctccctactgctctagattttccttaaaaacttctcaacttctgcaatgtgaatggagtttttgctgattttttttgcagCGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGTTGAGAATGTGGATGACAATGGAAAGTTTGGATTGAAGGTGTTGAGTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG