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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctattagctctccggttactcgtttctagtaatctgtgtagcataaagctacaaatacataggaaatttataatttcacttatgctgattttgtcatttctgttgctttgttggatatcagATTTGCCGTGCGCTGAACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATTAAGCCACAAAATCTACTG

Basic information

species Arabidopsis thaliana
transcript AT4G00720.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124792853|gb|EH882532.1|EH882532
EST:     ATCTTTGTTCAGCTCTATACTTATCTAG                         GTTTGCCGTGCGCTGAACTACTTACATCGCGTGGTTGGGGTGTGTCACCG
genomic: ATCTTTGTTCAGCTCTATACTTATC-AGgtgagttcta ... tggatatcagATTTGCCGTGCGCTGAACTACTTACATCGCGTGGTTGGGGTGTGTCACCG
EST: gi|125065990|gb|EL133021.1|EL133021
EST:     AAATGAATCAGCATATGCCAATTATCTTTGTTCAGCTCTATACTTATCAG                         ATTTGCCGTGCGCTGAACTACTTACATCGCGTGG
genomic: AAATGAATCAGCATATGCCAATTATCTTTGTTCAGCTCTATACTTATCAGgtgagttcta ... tggatatcagATTTGCCGTGCGCTGAACTACTTACATCGCGTGG
EST: gi|124917862|gb|EH991736.1|EH991736
EST:     AAATGAATCAGCATATGCCAATTATCTTTGTTCAGCTCTATACTTATCAG                         ATTTGCCGTGCGCTGA
genomic: AAATGAATCAGCATATGCCAATTATCTTTGTTCAGCTCTATACTTATCAGgtgagttcta ... tggatatcagATTTGCCGTGCGCTGA
EST: gi|125270228|gb|EL284313.1|EL284313
EST:     AATAGAATCAGCATATGCCAATTATCTTTGTTCAGCTCTATACTTATCAG                         ATTTGCCGTGCGCTGAACTACTTACATCGCGTGGTTGGGGTG
genomic: AAT-GAATCAGCATATGCCAATTATCTTTGTTCAGCTCTATACTTATCAGgtgagttcta ... tggatatcagATTTGCCGTGCGCTGAACTACTTACATCGCGTGGTTGGGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttataatttcacttatgctgattttgtcatttctgttgctttgttggatatcagATTTGCCGTGCGCTGAACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATTAAGCCACAAAATCTACTG
                tgctgat  putative branch site (score: 3)
                                       ctttgtt  putative PPT
     aatttca  TA-rich tract