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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgtggtattagtagccatagcacttgattaggtttaggctttatcagtgtaacactcgtttcttagatctagtgtaaaagatatgtctttgttaacagGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACATTTAGAGTTATTAAATAAGACAAATGTACTTATTGATGCCTTCCCCATACGGA

Basic information

species Arabidopsis thaliana
transcript AT3G61710.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA11G21490.1 (Glycine max), 3'ss of exon 5
attgtggtattagtagccatagcacttgatt-aggtttaggctttatcagtgtaacactcgtttcttagatctag---tgtaaaagatatgtctttgttaacagGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACATTTAGAGTTATTAAATAAGACAAATGTACTTATTGATGCCTTCCCCATACGGA
  |||||   ||| ||    | ||  |     |   ||      | |   || || |      |   |  ||||    | ||  | | ||   ||  ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||    |||||||| || | |||||||||||||||     
--tgtggc--tagaagttcaaacatgtagccgaaaattttctcctttttctgaaaaatataacttccaagtctaagcatttagcaaaaatactttaattaacagGAGGAGAGAGATGCAATTTTGGCCAAGATTGAAGTTTCACAAGCACATTTAGAATTATTGAAGCGTACAAATGTGCTCAATGATGCCTTCCCCATTTCTC

upper sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA04G26840.1 (Glycine max), 3'ss of exon 5
attgtggtattagtagccatagcacttgattaggtttaggctttatcagtgtaacactcgtttcttagatctagtgtaaaagatatgtctttgttaacagGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACATTTAGAGTTATTAAATAAGACAAATGTACTTATTGATGCCTTCCCCATACGGA
                     | | | ||  |  |||   |||| || |   || |     |  | |  || ||   |||     |   ||  ||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||    |||||||| || | ||| |||||||||||     
---------------------gtattagaa-aactttctcctttttctgaaaaata-----taataacttccagcaaaaa-----tactttaattaacagGAGGAGAGAGATGCAATTTTGGCCAAGATTGAAGTTTCACAGGCACATTTAGAATTATTGAAGCGTACAAATGTGCTCAATGACGCCTTCCCCATTTCTC

upper sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 3'ss of exon 5
attgtggtattagtagccatagcact-tgattaggtttag--gctttatcagtgtaacactcgtttcttagatctagtgtaaaagatatgtctttgttaacagGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACATTTAGAGTTATTAAATAAGACAAATGTACTTATTGATGCCTTCCCCATACGGA
  | || |  | |||   | | |  |     |   |||||  | ||||    | |  |  |   |  ||  ||    |  |||   |   | | ||| ||||||||||||||||||||||  |||| ||||||||||| ||||| |||||| ||||||| || || |  || |||||||| | |||||||||||||||  || 
-gtatgttgctggtatataaaccgttgctgctctttttagtagttttactgctttgtctatgaatctttcaattgtttacaaagagt---tttctgtcaacagGAAGAGAGAGATGCAATTCTGGCCAAGATTGAAGTGTCACAGGCACATCTAGAGTTGTTGAAGAGAACTAATGTACTGAATGATGCCTTCCCCATTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtgtaacactcgtttcttagatctagtgtaaaagatatgtctttgttaacagGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACATTTAGAGTTATTAAATAAGACAAATGTACTTATTGATGCCTTCCCCATACGGA
   gtgtaac  putative branch site (score: 3)
                                          tctttgtt  putative PPT
                               taaaagatat  TA-rich tract