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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgctaatgaatccttgtgcttgaaagaacatcatgcagttgtctcttaggttagttttgctgtaagcctgagcatatgcataataaatcattgttgcagGTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGATCTTCGATGGGGTGGTGATCCAAATATTGTTTTAGGTGTGACAGCACTTGT

Basic information

species Arabidopsis thaliana
transcript AT3G61050.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61050.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA18G45720.1 (Glycine max), 3'ss of exon 4
atgctaatgaatccttgtgcttgaaagaacatcatgcagttgtctcttaggttagttt--tgctgtaagcctgagcatatgcataataaatcattgt-tgcagGTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGATCTTCGATGGGGTGGTGATCCAAATATTGTTTTAGGTGTGACAGCACTTGT
 |  | |  |  | |  |||||       | |  |  | || ||| ||   ||  |||  |     |||  | |  |  |||||| |   |  || | |||||||||||||||||| ||| | ||  |||||||| ||| ||||||| ||||| | || |||||||||||||| ||||||||||| | |||   |||||||||
ttttttaccacccttattgcttctcc---ctttgttaatttttctgttgaattgttttcatatatcaagaattaatacttgcatattttcttcttctatgcagGTATTCGTGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCACTTGT

upper sequence: AT3G61050.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA09G40290.1 (Glycine max), 3'ss of exon 5
-atgctaatgaatccttgtgcttgaaagaacatcatgcagttgtctcttaggttagttttgctgtaagcctgagcatatgcataataaatcattgttgcagGTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGATCTTCGATGGGGTGGTGATCCAAATATTGTTTTAGGTGTGACAGCACTTGT
 |||| |||   |      || | |  |    ||     |||   | ||  |||   ||   |  | |  | |  |  |     ||   ||||   |||||||||||| ||||| ||| | ||  |||||||| ||| ||||||| ||||| | || |||||||||||||| ||||||||||| | |||   |||||||||
aatgc-aatttttttaccagccttattgtttctccctttgttaatttttctgttgaattgttttcatgtatcaagaattaatacattcttcatctatgcagGTATTCGCGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCACTTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124819135|gb|EH904001.1|EH904001
EST:     CCTGAAGTTCAGCAAATTGACGTTGGGTAACGTAGCACCAAAGATTGAAG                         TTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGAT
genomic: CCTGAAGTTCAGCAAATTGACGTTGGGTAACGTAGCACCAAAGATTGAAGgtaaagtacg ... attgttgcagGTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGAT
EST: gi|125023968|gb|EL096237.1|EL096237
EST:     TAACGTAGCACCAAAGATTGAAG                         GTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGAT
genomic: TAACGTAGCACCAAAGATTGAAGgtaaagtacg ... attgttgcagGTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGAT
EST: gi|116380658|gb|EG423250.1|EG423250
EST:     CCTGAAGTTCAGCAAATTGACGTTGGGTAACGTAGCACCAAAGATTGAAG                         GTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGATC
genomic: CCTGAAGTTCAGCAAATTGACGTTGGGTAACGTAGCACCAAAGATTGAAGgtaaagtacg ... attgttgcagGTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGATC
EST: gi|19874467|gb|AU235298.1|AU235298
EST:     CCTGAAGTTCAGCAAATTGACGTTGGGTAACGTAGCACCAAAGATTGAAG                         GTATTCGTGTTNAAAGTTTCAAGGAAGGTCAAGGTCACAATGGACCGTTGA
genomic: CCTGAAGTTCAGCAAATTGACGTTGGGTAACGTAGCACCAAAGATTGAAGgtaaagtacg ... attgttgcagGTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAG-TCACAATGGAC-GTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaggttagttttgctgtaagcctgagcatatgcataataaatcattgttgcagGTATTCGTGTTCAAAGTTTCAAGGAAGGTCAAGTCACAATGGACGTTGATCTTCGATGGGGTGGTGATCCAAATATTGTTTTAGGTGTGACAGCACTTGT
                                   ataataaatcattgtt  TA-rich tract