1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcactaatatcatcatggctgctcctggatcatctcatatagatgccagtttttggattcttttttaatatatatattctcaataaaactcttctcttttttcatattgcagGCTGATTAAACCTGGAGGGACCTACTTTTTG
species | Arabidopsis thaliana |
transcript | AT3G60910.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCAGTGATGCTCTTCTAAGTGCTTCGAGAATGTTGGGTGAAGTTAGCAG GCTGATTAAACCTGGAGGGACCTACTTTTTGEST: gi|86057616|gb|DR353373.1|DR353373
genomic: GGCAGTGATGCTCTTCTAAGTGCTTCGAGAATGTTGGGTGAAGTTAGCAGgtcactaata ... catattgcagGCTGATTAAACCTGGAGGGACCTACTTTTTG
EST: GGCAGTGATGCTCTTCTAAGTGCTTCGAGAATGTTGGGTGAAGTTAGCAG GCTGATTAAACCTGGAGGGACCTACTTTTTG
genomic: GGCAGTGATGCTCTTCTAAGTGCTTCGAGAATGTTGGGTGAAGTTAGCAGgtcactaata ... catattgcagGCTGATTAAACCTGGAGGGACCTACTTTTTG
ttcttttttaatatatatattctcaataaaactcttctcttttttcatattgcagGCTGATTAAACCTGGAGGGACCTACTTTTTG
ttttaat putative branch site (score: 3)
ctcttctcttttttca putative PPT
ttttaatatatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactaatatcatcatggctgctcctggatcatctcatatagatgccagtttttggattcttttttaatatatatattctcaataaaactcttctcttttttcatattgcagGCTGATTAAACCTGGAGGGACCTACTTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG