1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagtaaatccaaagcaggcttatgtttggttttattgctttgaagttgccttgatgacttactgtttgacttgcacttctctagCCACTGGAGTCGTCATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAGTGCAAAGTTTGCAGCATATGAAAAGAAGTACCCAGAGGAAGCTTCTGAG
species | Arabidopsis thaliana |
transcript | AT3G60750.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAG CCACTGGAGTCGTCATACCCCTGAAGGAGCTACTCTTGAATCTGACTGGAGEST: gi|124848211|gb|EH932648.1|EH932648
genomic: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAG
EST: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAA-G CCACTGGAGTCGTCATACACCTGAAEST: gi|116446637|gb|EG489229.1|EG489229
genomic: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACACCTGAA
EST: GGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAG CCACTGGAGTCGTCATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAGEST: gi|125002265|gb|EL074534.1|EL074534
genomic: GGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAG
EST: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAG CCACTGGAGTCGTCATACACCTGAAGGAAGCTACTCTTGAATCTGACTGGAEST: gi|125158805|gb|EL187220.1|EL187220
genomic: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACACCTGAAGGA-GCTACTCTTGAATCTGACTGGA
EST: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAG CCACTGGAGTCGTCATACA
genomic: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACA
ttttattgctttgaagttgccttgatgacttactgtttgacttgcacttctctagCCACTGGAGTCGTCATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAGTGCAAAGTTTGCAGCATATGAAAAGAAGTACCCAGAGGAAGCTTCTGAG
cacttctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtaaatccaaagcaggcttatgtttggttttattgctttgaagttgccttgatgacttactgtttgacttgcacttctctagCCACTGGAGTCGTCATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAGTGCAAAGTTTGCAGCATATGAAAAGAAGTACCCAGAGGAAGCTTCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA