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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcaaatcctatagaattcctggagtctattatgtctttattctgactggttcgatttaaacagCACCATAGCTTTTGGAGTTCTTAACTTCTTCGGATCGGTCTTTGGTGACTTAACTGAGTCAATGATCAAACGTGATGCGGGTGTCAAAGACTCCGGCTCA

Basic information

species Arabidopsis thaliana
transcript AT3G60620.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60620.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv15s0048g00240.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------gtactcaaatccta----tagaattcctggagtctattatgtctttattctgactggttcgatt-taaacagCACCATAGCTTTTGGAGTTCTTAACTTCTTCGGATCGGTCTTTGGTGACTTAACTGAGTCAATGATCAAACGTGATGCGGGTGTCAAAGACTCCGGCTCA
                              |||| ||   | |    |  ||    | | ||  | || |  ||||      ||  || || |     |||  | |||||||||||| |||| || ||||| |||||  | ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| || 
tgaagttgattcaggtctgttttgaacttttacttaatgtccaaaaatgaaaaattttgtgttgacta-gcatttaactcatcttctttgactgctgtcagTGCAATAGCTTTTGGATTTCTGAATTTCTTTGGATCTCTTTTTGGGGACCTTACTGAGTCAATGATCAAACGTGATGCGGGTGTCAAAGACTCCGGGTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagaattcctggagtctattatgtctttattctgactggttcgatttaaacagCACCATAGCTTTTGGAGTTCTTAACTTCTTCGGATCGGTCTTTGGTGACTTAACTGAGTCAATGATCAAACGTGATGCGGGTGTCAAAGACTCCGGCTCA
                               ttctgac  putative branch site (score: 2)
                  tattatgtctttatt  TA-rich tract