1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagtctatgagtctttcgttttcatatctttgctttaaagagacatataatacttctatttttgtgtggtctccttttcccaaatacatattggtgttattggatagaaattatagcatctaacacaaacttcagtttctcatctaacacaagctttatctggttatcggttcagGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGACCGAGCAAGTAATTCTGAAACAAAGTGGATTAGAAAATAATGTTGCTTGGGCCTTCGGACTTGGAC
species | Arabidopsis thaliana |
transcript | AT3G58140.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATATTTCCCATTTACCAATCCATCTTTTGAGCTTGAGATATATTTTAAG GAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGACCGAGCAAGTAATTCTGEST: gi|124910262|gb|EH984342.1|EH984342
genomic: CATATTTCCCATTTACCAATCCATCTTTTGAGCTTGAGATATATTTTAAGgtagtctatg ... atcggttcagGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGACCGAGCAAGTAATTCTG
EST: GAGCTTGAGATATATTTTAAG GAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGACCGAGCAAGTAATTCTGEST: gi|116422564|gb|EG465156.1|EG465156
genomic: GAGCTTGAGATATATTTTAAGgtagtctatg ... atcggttcagGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGACCGAGCAAGTAATTCTG
EST: CATATTTCCCATTTACCAATCCATCTTTTGAGCTTGAGATATATTTTAAG GAAGACTGGTTGGAGGTTTTGGGCTGTGGG
genomic: CATATTTCCCATTTACCAATCCATCTTTTGAGCTTGAGATATATTTTAAGgtagtctatg ... atcggttcagGAAGACTGGTTGGAGGTTTTGGGCTGTGGG
taacacaaacttcagtttctcatctaacacaagctttatctggttatcggttcagGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGACCGAGCAAGTAATTCTGAAACAAAGTGGATTAGAAAATAATGTTGCTTGGGCCTTCGGACTTGGAC
atctaac putative branch site (score: 2)
tttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtctatgagtctttcgttttcatatctttgctttaaagagacatataatacttctatttttgtgtggtctccttttcccaaatacatattggtgttattggatagaaattatagcatctaacacaaacttcagtttctcatctaacacaagctttatctggttatcggttcagGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGACCGAGCAAGTAATTCTGAAACAAAGTGGATTAGAAAATAATGTTGCTTGGGCCTTCGGACTTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA