1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaggaacttgaaacaagaagattaatattaacctgtgttatgttcctttttctgaaaatgttgagatttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAACCCTGAGTTCAAGAGGAAACTGGATAGAATGGTTGTGAGCTATGAGAAGC
species | Arabidopsis thaliana |
transcript | AT3G56940.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAACEST: gi|124848942|gb|EH933379.1|EH933379
genomic: AGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAAC
EST: GGGTATCGGGTTAAACACAAAGGTAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGEST: gi|124928188|gb|EL005852.1|EL005852
genomic: GGGTATCGGGTTAAACACAAAGG-AGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTG
EST: TGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAACEST: gi|124741302|gb|EH832464.1|EH832464
genomic: TGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAAC
EST: CACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTEST: gi|125087986|gb|EL146918.1|EL146918
genomic: CACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATT
EST: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTEST: gi|125176994|gb|EL196295.1|EL196295
genomic: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCT
EST: CAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAACEST: gi|124891208|gb|EH970110.1|EH970110
genomic: CAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAAC
EST: AACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGEST: gi|125104797|gb|EL158764.1|EL158764
genomic: AACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGG
EST: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTEST: gi|164067966|gb|ES038823.1|ES038823
genomic: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCT
EST: CGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCEST: gi|125169926|gb|EL193677.1|EL193677
genomic: CGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCC
EST: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAAEST: gi|164031195|gb|ES080340.1|ES080340
genomic: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAA
EST: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGTTGGATGTTGAGAAEST: gi|124869978|gb|EH954415.1|EH954415
genomic: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAA
EST: CATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAACEST: gi|124705925|gb|EH797327.1|EH797327
genomic: CATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAAC
EST: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCAEST: gi|125034742|gb|EL107011.1|EL107011
genomic: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCA
EST: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACEST: gi|125222778|gb|EL236863.1|EL236863
genomic: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCAC
EST: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTEST: gi|124855376|gb|EH939813.1|EH939813
genomic: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTT
EST: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGEST: gi|124742345|gb|EH833507.1|EH833507
genomic: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAG
EST: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAG ACAAACCGAACCACGGCAAGAA
genomic: AGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaac ... tttgtttcagACAAACCGAACCACGGCAAGAA
ttaatattaacctgtgttatgttcctttttctgaaaatgttgagatttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAACCCTGAGTTCAAGAGGAAACTGGATAGAATGGTTGTGAGCTATGAGAAGC
tattaac putative branch site (score: 1)
tttgtttc putative PPT
aaaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaggaacttgaaacaagaagattaatattaacctgtgttatgttcctttttctgaaaatgttgagatttgtttcagACAAACCGAACCACGGCAAGAATATTCCCTGCGGTGCTGGATGTTGAGAACCCTGAGTTCAAGAGGAAACTGGATAGAATGGTTGTGAGCTATGAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC