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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttcagccaatgttgttcaaaatttaaagtagtcaataacctttttaagtgaaccttattgaggattatcttgtatttctaattacaaacaaagaccaatatgtttttgatacttggtggtatctttgtcttggtttctcattggtagccttgatttccagGGCGTGGATTATCTGAAATATGACAATTGTTTCAACCTGGGAATAAAACCAATCGAAAG

Basic information

species Arabidopsis thaliana
transcript AT3G56310.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164047454|gb|ES067803.1|ES067803
EST:     CGGGATCCCTTTTCCATGAAGTGGATGATGCAGACATTTTTGCTTCTTGG                         GGCGTGGATTATCTGAAATAT
genomic: CGGGATCCCTTTTCCATGAAGTGGATGATGCAGACATTTTTGCTTCTTGGgttagttttc ... tgatttccagGGCGTGGATTATCTGAAATAT
EST: gi|125247214|gb|EL261299.1|EL261299
EST:     CGGGATCCCTTTTCCATGAAGTGGATGATGCAGACATTTTTGCTTCTTGG                         GGCGTGGATTATCTGAAATNTGACAATTGTTTCAACCTGGGAATAAAACCA
genomic: CGGGATCCCTTTTCCATGAAGTGGATGATGCAGACATTTTTGCTTCTTGGgttagttttc ... tgatttccagGGCGTGGATTATCTGAAATATGACAATTGTTTCAACCTGGGAATAAAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatacttggtggtatctttgtcttggtttctcattggtagccttgatttccagGGCGTGGATTATCTGAAATATGACAATTGTTTCAACCTGGGAATAAAACCAATCGAAAG
                                                tttcc  CT-rich tract
              tatcttt  TA-rich tract