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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttatattgctagtattagtaactcttatactttggcctgattgttccttgaatcccttgtgtttactgcggtttgttgtgcagAACTAACCAAACAACAGAGCGAGAACTGTCCCCAACAGGCCTTGATTCTAGCCCTAGGGACGTTCTAG

Basic information

species Arabidopsis thaliana
transcript AT3G51950.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125225024|gb|EL239109.1|EL239109
EST:     GTTCTTGTCAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAATACAG                         AACTAACCAAACAACAGAGCGAGAACTGTCCCCAACAGGCC
genomic: GTTCTTGTCAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAATACAGgtacttatat ... tgttgtgcagAACTAACCAAACAACAGAGCGAGAACTGTCCCCAACAGGCC
EST: gi|164209189|gb|EL968019.1|EL968019
EST:     AAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAATACAG                         AACTAACCAAACAACAGAGCGAGAACTGTCCCCAACAGGCCTTGATTCTAG
genomic: AAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAATACAGgtacttatat ... tgttgtgcagAACTAACCAAACAACAGAGCGAGAACTGTCCCCAACAGGCCTTGATTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttggcctgattgttccttgaatcccttgtgtttactgcggtttgttgtgcagAACTAACCAAACAACAGAGCGAGAACTGTCCCCAACAGGCCTTGATTCTAGCCCTAGGGACGTTCTAG
      gcctgat  putative branch site (score: 4)