1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcacatatctttcccttctacatcaccgtacatttattactgattgcttgactgaagaagtagagtcaaacttctttttgcatgatcttatcattcacttcccgcttaatttttcagtgatctttttttgttcacgttcactatccaggttcactaaaatattgtcttgataattcaaatttgtataaaacagGTGGATACTAAAGGAAAAGGAACTCTAGACTATGGAGAATTTGTAGCAGTGTCTCTCCACCTGCAAAAGGTAGCAAACGATGAGCATCTCCGCAAAGCCT
species | Arabidopsis thaliana |
transcript | AT3G51850.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTAGTACACAGCTAGCGGGAATCAGAAGTTCAGATGCTTATTGAAGCG GNGGATACTAAAGGAAAAGGAACTCTAGAEST: gi|116407590|gb|EG450182.1|EG450182
genomic: TTTTAGTACACAGCTAGCGG-AATCAGAAGTTCAGATGCTTATTGAAGCGgtgcacatat ... tataaaacagGTGGATACTAAAGGAAAAGGAACTCTAGA
EST: ATTTTAGTACACAGCTAGCGGAATCAGAAGTTCAGATGCTTATTGAAGCG GTGGATACTAAAGGAAAAGGAACTCTAGACTATGGAGAATTTGTAGCAGTG
genomic: ATTTTAGTACACAGCTAGCGGAATCAGAAGTTCAGATGCTTATTGAAGCGgtgcacatat ... tataaaacagGTGGATACTAAAGGAAAAGGAACTCTAGACTATGGAGAATTTGTAGCAGTG
cactatccaggttcactaaaatattgtcttgataattcaaatttgtataaaacagGTGGATACTAAAGGAAAAGGAACTCTAGACTATGGAGAATTTGTAGCAGTGTCTCTCCACCTGCAAAAGGTAGCAAACGATGAGCATCTCCGCAAAGCCT
taaaatattgtcttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcacatatctttcccttctacatcaccgtacatttattactgattgcttgactgaagaagtagagtcaaacttctttttgcatgatcttatcattcacttcccgcttaatttttcagtgatctttttttgttcacgttcactatccaggttcactaaaatattgtcttgataattcaaatttgtataaaacagGTGGATACTAAAGGAAAAGGAACTCTAGACTATGGAGAATTTGTAGCAGTGTCTCTCCACCTGCAAAAGGTAGCAAACGATGAGCATCTCCGCAAAGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG