1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggggaaaagagttgctcacaaagtgttatgctctatgtagttgtctttatgtacctgaaactctcaaactaatcagttggtcagaaacgtgattcgaattttgtaccgtttctgcattccagttttacgtttcatatgtgcgtttcttttgcagGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTATCTAGAGCAATCAGATTCACCCCGATCTGCTTCTGGGGAGTTTTTGG
species | Arabidopsis thaliana |
transcript | AT3G51520.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAGTAATTCTGCTTTGGTCAG GCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTAEST: gi|86076964|gb|DR372721.1|DR372721
genomic: CCAGT-ATTCTGCTTTGGTCAGgtaggggaaa ... tcttttgcagGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTA
EST: TAGCCATGGAACAGGGGAGCCCTCTGGTTCCAGTATTCTGCTTTGGTCAG GCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTAEST: gi|86080043|gb|DR375800.1|DR375800
genomic: TAGCCATGGAACAGGGGAGCCCTCTGGTTCCAGTATTCTGCTTTGGTCAGgtaggggaaa ... tcttttgcagGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTA
EST: TAGCCATGGAACAGGGGAGCCCTCTGGTTCCAGTATTCTGCTTTGGTCAG GCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTAEST: gi|124744729|gb|EH835891.1|EH835891
genomic: TAGCCATGGAACAGGGGAGCCCTCTGGTTCCAGTATTCTGCTTTGGTCAGgtaggggaaa ... tcttttgcagGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTA
EST: CTGCTTTGGTCAG GCACGCGTGTACAAATGGTGGAAGEST: gi|116424222|gb|EG466814.1|EG466814
genomic: CTGCTTTGGTCAGgtaggggaaa ... tcttttgcagGCACGCGTGTACAAATGGTGGAAG
EST: TAGCCATGGAACAGGGGAGCCCTCTGGTTCCAGTATTCTGCTTTGGTCAG GCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTA
genomic: TAGCCATGGAACAGGGGAGCCCTCTGGTTCCAGTATTCTGCTTTGGTCAGgtaggggaaa ... tcttttgcagGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTA
tttgtaccgtttctgcattccagttttacgtttcatatgtgcgtttcttttgcagGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTATCTAGAGCAATCAGATTCACCCCGATCTGCTTCTGGGGAGTTTTTGG
cgtttctttt CT-rich tract
tttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggggaaaagagttgctcacaaagtgttatgctctatgtagttgtctttatgtacctgaaactctcaaactaatcagttggtcagaaacgtgattcgaattttgtaccgtttctgcattccagttttacgtttcatatgtgcgtttcttttgcagGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGATCTCTATCTTAAACTATCTAGAGCAATCAGATTCACCCCGATCTGCTTCTGGGGAGTTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA