1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagcaagaaatagacagatggtcacattgttttaccattaatgtttgaatttgttctatcaatgtttaatctttttaactattgcagGGGCTATCCTTCGAGTTTCCAATTCCAAACCAGTACACGGACTGCTGCCATGATGGAGAAG
species | Arabidopsis thaliana |
transcript | AT3G51130.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGGGATTTATGATAAAGAA-GAGGGATTTATTCTCTGTTCTACCGG GGGCTATC-TTCGAGTTTCCAAEST: gi|86040771|gb|DR336526.1|DR336526
genomic: TTCCTGGGATTTATGATAAAGAAAGAGGGATTTATTCTCTGTTCTACCCGgtgagcaaga ... actattgcagGGGCTATCCTTCGAGTTTCCAA
EST: TCCTGGGATTTTATGATAAAGANAGAGGGATTTATTCTCTGTTCTACCCG GGGCTATCCTTCGAGTTT
genomic: TCCTGGGATTT-ATGATAAAGAAAGAGGGATTTATTCTCTGTTCTACCCGgtgagcaaga ... actattgcagGGGCTATCCTTCGAGTTT
taccattaatgtttgaatttgttctatcaatgtttaatctttttaactattgcagGGGCTATCCTTCGAGTTTCCAATTCCAAACCAGTACACGGACTGCTGCCATGATGGAGAAG
ttttaac putative branch site (score: 2)
tatcaatgtttaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaagaaatagacagatggtcacattgttttaccattaatgtttgaatttgttctatcaatgtttaatctttttaactattgcagGGGCTATCCTTCGAGTTTCCAATTCCAAACCAGTACACGGACTGCTGCCATGATGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA