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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctttgtgtcaaccctttgtttactagttgagatttttttatagcactgtttcttaactaatcaagagatgttgatgcagAGGGAGCTAGAGCTGCTTTGAGCATGTCGGGTACTGTGCTAGGTTTTTACCCTCTTAAGGTTCTTCCTTCCAAAACAGCTATTGCTCCTGTTAACCCGAC

Basic information

species Arabidopsis thaliana
transcript AT3G49390.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077541|gb|DR373298.1|DR373298
EST:     TGATCCAAATTCTGTCCTTCGTTTCGCTTTCATTGAATTTACCAATGAAG                         AGGGAGCTAGAGCTGCTTTGAGCATGTCGGGTACTGTGCTAGGTTTTTACC
genomic: TGATCCAAATTCTGTCCTTCGTTTCGCTTTCATTGAATTTACCAATGAAGgtactctttg ... gttgatgcagAGGGAGCTAGAGCTGCTTTGAGCATGTCGGGTACTGTGCTAGGTTTTTACC
EST: gi|124766531|gb|EH856661.1|EH856661
EST:     TTCGTTTCGCTTTCATTGAATTTACCAATGAAG                         AGGGAGCTAGAGCTGCTTTGAGCATGTCGGGTACTGTGCTAGGTTTTTACC
genomic: TTCGTTTCGCTTTCATTGAATTTACCAATGAAGgtactctttg ... gttgatgcagAGGGAGCTAGAGCTGCTTTGAGCATGTCGGGTACTGTGCTAGGTTTTTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgagatttttttatagcactgtttcttaactaatcaagagatgttgatgcagAGGGAGCTAGAGCTGCTTTGAGCATGTCGGGTACTGTGCTAGGTTTTTACCCTCTTAAGGTTCTTCCTTCCAAAACAGCTATTGCTCCTGTTAACCCGAC
     agatttttttata  TA-rich tract