1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttactcactttccatgctatcacaacatatgttttgcttgcttcgtcttggttaaagaccgagtcatcaaactttttgtttcttaacagGCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAA
species | Arabidopsis thaliana |
transcript | AT3G48420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCA GCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAAEST: gi|19798937|gb|AU230227.1|AU230227
genomic: AAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAgtaagttact ... ttcttaacagGCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAA
EST: AAATCAAGATATTCGCAGGATACGTAGTCCCCAAAAAGAAACCTGATCCA GCCATCTACAAGCTTACCAGCTGAAACCCTTGGAGTTGATCCCTCAAAEST: gi|125081499|gb|EL142703.1|EL142703
genomic: AAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAgtaagttact ... ttcttaacagGCCATCTACAA-CTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAA
EST: AAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCA GCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAAATGEST: gi|124973012|gb|EL046671.1|EL046671
genomic: AAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAgtaagttact ... ttcttaacagGCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAAATG
EST: TTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCA GCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGNTCCCTCAAAEST: gi|47832151|gb|CK121835.1|CK121835
genomic: TTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAgtaagttact ... ttcttaacagGCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAA
EST: AAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCA GCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAAEST: gi|125232845|gb|EL246930.1|EL246930
genomic: AAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAgtaagttact ... ttcttaacagGCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAA
EST: AAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCA GCCATCTACAACTTAGCAGCTAGAAACCCTTGGAGTTGATCCCTCAAAATGEST: gi|125298382|gb|EL312467.1|EL312467
genomic: AAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAgtaagttact ... ttcttaacagGCCATCTACAACTTAGCAGCT-GAAACCCTTGGAGTTGATCCCTCAAAATG
EST: TAGTCCCCAAAAAGAAACCTGATCCA GCCATCTTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAA
genomic: TAGTCCCCAAAAAGAAACCTGATCCAgtaagttact ... ttcttaacagGCCATC-TACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAA
tgcttgcttcgtcttggttaaagaccgagtcatcaaactttttgtttcttaacagGCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAA
ctttttgtttctt CT-rich tract
tttttgtttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttactcactttccatgctatcacaacatatgttttgcttgcttcgtcttggttaaagaccgagtcatcaaactttttgtttcttaacagGCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG