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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggtttctctcatgcaaaaaacaaatagctggaactgtttcttcgaattaacaattgtgttgctaatcatataatctaactgcagCTTGCAACATCAAGTGGGTTTCCCTATGCCAAGAAGTATTCTCGTATGATCAGGGCACTTTGGTCACTGTTCCCACCCAATACCTTTTCTCAGGGTTTAA

Basic information

species Arabidopsis thaliana
transcript AT3G47730.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116447290|gb|EG489882.1|EG489882
EST:     CAGCAACGACTGTCGGTTTCTTTGTGTTTCTGGTTGGCTTTGTAACACAG                         TTTGCAACATCAAGTGGGTTTCCCTATGCCAAGAAGTATTCTCGTATGATC
genomic: CAGCAACAACTGTCGGTTTCTTTGTGTTTCTGGTTGGCTTTGTAACACAGgtgcggtttc ... ctaactgcagCTTGCAACATCAAGTGGGTTTCCCTATGCCAAGAAGTATTCTCGTATGATC
EST: gi|116396097|gb|EG438689.1|EG438689
EST:     CAGCAACAACTGTCGGTTTCTTTGTGTTTCTGGTTGGCTTTGTAACACAG                         CTTGCAACATCAAGTGGGTTTCCCTATGCCAAGAAGTATTCTCGTATGATC
genomic: CAGCAACAACTGTCGGTTTCTTTGTGTTTCTGGTTGGCTTTGTAACACAGgtgcggtttc ... ctaactgcagCTTGCAACATCAAGTGGGTTTCCCTATGCCAAGAAGTATTCTCGTATGATC
EST: gi|116447291|gb|EG489883.1|EG489883
EST:     CAGCAACGACTGTCGGTTTCTTTGTGTTTCTGGTTGGCTTTGTAACACAG                         TTTGCAACATCAAGTGGGTTTCCCTATGCCAAGAAGTATTCTCGTATGATC
genomic: CAGCAACAACTGTCGGTTTCTTTGTGTTTCTGGTTGGCTTTGTAACACAGgtgcggtttc ... ctaactgcagCTTGCAACATCAAGTGGGTTTCCCTATGCCAAGAAGTATTCTCGTATGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaactgtttcttcgaattaacaattgtgttgctaatcatataatctaactgcagCTTGCAACATCAAGTGGGTTTCCCTATGCCAAGAAGTATTCTCGTATGATCAGGGCACTTTGGTCACTGTTCCCACCCAATACCTTTTCTCAGGGTTTAA
                                           atctaac  putative branch site (score: 2)
                                 taatcatataatctaa  TA-rich tract