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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttccttgatttgctgcttattgttggtgtcaacgaattaaagattgagcttcttcattctgattcaagattttaatgtccaaactcagGCTTATGCACAATCCGTGAACTTATCAGCTAGTGACTTGTATACTCCAAAAGACACTCCCATGCAGTACCTGAACTATGGTACTGCGGTCAGCGAG

Basic information

species Arabidopsis thaliana
transcript AT3G43600.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125047258|gb|EL119527.1|EL119527
EST:     TAATGGAAAGATCAGATGGTCCAATCACCTGGAATGAGTTGATTTCTCAG                         GCTTATACACAATCCGTGAACTTATCAGCTAGTGACTTG
genomic: TAATGGAAAGATCAGATGGTCCAATCACCTGGAATGAGTTGATTTCTCAGgtattcttcc ... ccaaactcagGCTTATGCACAATCCGTGAACTTATCAGCTAGTGACTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattaaagattgagcttcttcattctgattcaagattttaatgtccaaactcagGCTTATGCACAATCCGTGAACTTATCAGCTAGTGACTTGTATACTCCAAAAGACACTCCCATGCAGTACCTGAACTATGGTACTGCGGTCAGCGAG
                                    ttttaat  putative branch site (score: 3)
                            attcaagattttaat  TA-rich tract