Sequence
atgc intronic sequence ATGC exonic sequencegtaattctctgatgtagaaagctatgttttgtaacttttagtgggctgaactgtttcctctacttattttgcttgcaatatcaatttaaattattttaatctgtttttatcgcagTGCATGGGGAGCCATTGCTGGGAGTTATTAGAGTTTGCTATAACATTGCTCTAAACAG
Basic information
species | Arabidopsis thaliana |
transcript | AT3G43300.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G43300.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G335287_T01 (Zea mays), 3'ss of exon 4
---gtaattctctgatgtagaaagctatgttttgtaacttttagtgggctgaactgtttcctctacttattttgcttgcaatatcaatttaaattattttaatctgtttttatcgcagTGCATGGGGAGCCATTGCTGGGAGTTATTAGAGTTTGCTATAACATTGCTCTAAACAG
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aaagtagttctgc-atgtagatatatttctatgttaaagtacaatg---taagctg----caaaacacaattcatcttttgtgtttgatt---ctgtttt-------ttggaatgcagTTCATGGAGAGCCATTGCTTGGGGTCATTAGAGTATGCTATAACATTGCTCTTAATAG
upper sequence: AT3G43300.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G167318_T01 (Zea mays), 3'ss of exon 4
gtaattctctgatgtagaaagctatgttttgtaactt--ttagtgggctgaactgtttcctctacttattttgcttgcaatatcaatttaaattattttaatctgttttt---atcgcagTGCATGGGGAGCCATTGCTGGGAGTTATTAGAGTTTGCTATAACATTGCTCTAAACAG------------------------------------------
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-------------caaaatagttctgcat-gtagctatattcctatgttaaagta------caacgtaagctgcaagctcaatacatcttttgtgtctgattctgttttttggaatgcagTTCATGGAGAGCCATTGCTTGGGGTCATTAGAGTATGCTATAACATTGCTCTTAATAGGTACCTGTTATATCGCTACCTTCTTGTTTGCAGTATGTTGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124734542|gb|EH825944.1|EH825944EST: TTACAGCTGTTGCTTCAGGAAAGTTCAAAG TGCATGGGGAGCCATTGCTGGGAGTTATTAGAGTTTGCTATAACATTGCTC
genomic: TTACAGCTGTTGCTTCAGGAAAGTTCAAAGgtaattctct ... tttatcgcagTGCATGGGGAGCCATTGCTGGGAGTTATTAGAGTTTGCTATAACATTGCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacttattttgcttgcaatatcaatttaaattattttaatctgtttttatcgcagTGCATGGGGAGCCATTGCTGGGAGTTATTAGAGTTTGCTATAACATTGCTCTAAACAG
ttttaat putative branch site (score: 3)
tctgttttt CT-rich tract
ttgcaatatcaattta TA-rich tract