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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatcttttgttaaatttctttggaatttaagacttacgaattgtgattatgaatgaggttgtggtctttcaaaacaatgatgtttttcatcttttctcatggtgtctcttttgcttctgtggcagTACCAACATTAATCATTGCTCATGAGTTTTATGATGCTCTTCCAGTTCATCAATTTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G28700.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G28700.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv14s0066g02600.t01 (Vitis vinifera), 3'ss of exon 5
gtatgcatcttttgttaaatttctttggaatttaagacttacgaattgtgattatgaatgaggttgtggtctttcaaaacaatgatgtttttcatcttttctcatggtgtctcttttgcttctgtggcagTACCAACATTAATCATTGCTCATGAGTTTTATGATGCTCTTCCAGTTCATCAATTTCAG
                       | ||||  | |    ||  || |  ||    |  |  |   | |  | |     | | ||      |||  ||| ||  | ||   ||| ||| |||  | |  |||| |||||| | || ||||| |||||||||||||||||||| ||||||||||||||||||
----------------------gtatggagat-attctttctgagtcatgtcctt--acaaacctcttatgtgcttgagccat----ccttttgtctcttaacttg-catctgttt-gctctttttccagTGCCAACAATCATTATTGCCCATGAGTTTTATGATGCTCTACCAGTTCATCAATTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaacaatgatgtttttcatcttttctcatggtgtctcttttgcttctgtggcagTACCAACATTAATCATTGCTCATGAGTTTTATGATGCTCTTCCAGTTCATCAATTTCAG
                                tgtctcttttgcttct  CT-rich tract
         atgttttt  TA-rich tract