1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtattacttctctacttttgctcttatcgatgctttttactctctctttctatacttttcttactctctctttctatactttgtctcttgaattcaaagGTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCATCTTACGGATGTCAAATCACTGTTGTTCCGTCCACATTTCCAGCTGCCG
species | Arabidopsis thaliana |
transcript | AT3G27740.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGAGATGGGAAATCCTACAAA GTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCAEST: gi|125171903|gb|EL194465.1|EL194465
genomic: ACGAGATGGGAAATCCTACAAAgtgagtatta ... gaattcaaagGTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCA
EST: ACGCTGAATGGGATTTCAACACGAATTCACGAGATGGGAAATCCTACAAA GTTATTGCTTACGATTTTGGAATCAAGEST: gi|47830985|gb|CK120669.1|CK120669
genomic: ACGCTGAATGGGATTTCAACACGAATTCACGAGATGGGAAATCCTACAAAgtgagtatta ... gaattcaaagGTTATTGCTTACGATTTTGGAATCAAG
EST: ACGCTGAATGGGATTTCAACACGAATTCACGAGATGGGAAATCCTACAAA GTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCAEST: gi|125000049|gb|EL072318.1|EL072318
genomic: ACGCTGAATGGGATTTCAACACGAATTCACGAGATGGGAAATCCTACAAAgtgagtatta ... gaattcaaagGTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCA
EST: CGCTGAATGGGATTTCAACACGAATTCACGAGATGGGAAATCCTAACAAA GTTATTGCTTACGATTTTGGAATCAAG
genomic: CGCTGAATGGGATTTCAACACGAATTCACGAGATGGGAAATCCTA-CAAAgtgagtatta ... gaattcaaagGTTATTGCTTACGATTTTGGAATCAAG
tctttctatacttttcttactctctctttctatactttgtctcttgaattcaaagGTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCATCTTACGGATGTCAAATCACTGTTGTTCCGTCCACATTTCCAGCTGCCG
ttcttac putative branch site (score: 2)
cttttcttactctctc CT-rich tract
tatactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtattacttctctacttttgctcttatcgatgctttttactctctctttctatacttttcttactctctctttctatactttgtctcttgaattcaaagGTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCATCTTACGGATGTCAAATCACTGTTGTTCCGTCCACATTTCCAGCTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC