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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaatgatctattaaacttgcactttctctaatcttcccaatgatttattcaattccattggcggactaagtaagttgcaatggttttcagGTTCTACATTTTGACTATAAGCTTTTCCGAGGTGATATCGCTCAACGTGGCCGCGGTTTACCAATGTTAGATTTCAGAATAAAGGATTGGGGTCCTGCAC

Basic information

species Arabidopsis thaliana
transcript AT3G26950.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125324076|gb|EL338156.1|EL338156
EST:     CTCCATCTGTAGTGAAAATTATCAAAACAAATATCAGCACCATTGCAGAG                         GTTCTACATTTTGACTATAAGCTTTTCCGAGGTGA
genomic: CTCCATCTGTAGTGAAAATTATCAAAACAAATATCAGCACCATTGCAGAGgtatcaatga ... tggttttcagGTTCTACATTTTGACTATAAGCTTTTCCGAGGTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccaatgatttattcaattccattggcggactaagtaagttgcaatggttttcagGTTCTACATTTTGACTATAAGCTTTTCCGAGGTGATATCGCTCAACGTGGCCGCGGTTTACCAATGTTAGATTTCAGAATAAAGGATTGGGGTCCTGCAC
                                                ttttc  CT-rich tract
     tgatttattcaatt  TA-rich tract