Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaaactacctcgctgcaatctttaacatgcattaccgatttactaagtctctgctcttctaatatctttagtatgccttggtcacagAGTACTCGTTGCTACAGCCTTTATAGTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGTCACCAG

Basic information

species Arabidopsis thaliana
transcript AT3G26670.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26670.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 5
--------gtatgcaaact-acctcg--ctgcaatctttaacatgcattaccgatttactaagtctctgctcttctaat---atctttagtatgccttggtcacagAGTACTCGTTGCTACAGCCTTTATAGTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGTCACCAG
          ||   || | | || |   | | | |||| |||    |||    |||  |     | |   || ||||    || |  | |||  |||  |  ||| ||||| ||||| ||||||||||| |||||||| ||| |||| ||||| |||||||| || ||||||||||| |
gtatgttcaaatctgaagtgagcttgatttccgaactttgacac-tgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcagGGTACTGGTTGCCACAGCCTTTATTGTTCTTGGGAACATTTTTCTTGTTGCTTTTGGCAACCACCAGTCACCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccgatttactaagtctctgctcttctaatatctttagtatgccttggtcacagAGTACTCGTTGCTACAGCCTTTATAGTTCTTGGAAACGTTTTCCTTGTAGCTTTTGGTAATCACCAGTCACCAG
                        ttctaat  putative branch site (score: 2)
                           taatatctttagtat  TA-rich tract