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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttaatatccactttagcgtttgttcttgaatgttttttccttgatgtatatatattgtggggttttgatttgcagCTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAATCTTGTACTATATGTTCAACACACTTTTGTATTTCTTGCTTGTTCTTCAC

Basic information

species Arabidopsis thaliana
transcript AT3G25540.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116454728|gb|EG497320.1|EG497320
EST:     GCCGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGGG                         CTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAAT
genomic: GTCGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGgtttgtttaa ... tgatttgcagCTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttgaatgttttttccttgatgtatatatattgtggggttttgatttgcagCTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAATCTTGTACTATATGTTCAACACACTTTTGTATTTCTTGCTTGTTCTTCAC
                                          ttttgat  putative branch site (score: 4)
                    ttgatgtatatatatt  TA-rich tract