Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT

Basic information

species Arabidopsis thaliana
transcript AT3G25520.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 6
-------------------------------------gtattaacttgtttctctttttttgttgtgagtgctcttatttgt------cattcttcttgagcaaatgcttatactggcaattct--ttaata-tccttttggtt----cgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
                                      || ||  |  ||| ||  ||     |   | | |||   | | |      ||      ||  |  ||   ||  | ||   ||     ||| ||   | | ||| |      || |||   |||| |||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||| | |||||  | ||||| |||||| |||| || ||| | || |
gtgtgttgtgctttgatcgcaactgttggctgctgtaataatagttgatttatcacttgaacatcaaattcctcagctcttttagaaacacaaccgttacgataacctttggattgttgatctgtattagtagctcatgtggatatacttctcttttcttctgcagGGAGCTTTGGATGGTGGTCTTGACATTCCTCACAGTGACAAGAGGTTTGCTGGGTTCAAGAAGGACGAGAAGCAGCTTGATTCTGATATTCACCGCAAGT

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 3'ss of exon 6
----------------------------------------gta-ttaacttgtttctctttttttg---ttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctt--taata--tccttttggttcgctgtt-tgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
                                         || || | ||||  ||      |     |  | ||  || |||     ||      |  |   ||   ||  | ||   ||   |  || ||  || | | | |   ||  | |   |||| |||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||| | |||||  | ||||| |||||| |||| || ||| | || |
gtgtgttgtgctttgatctcaactgttggctgctgtaataatagttgatttgtcacttgaacatcaaattcatcagctcttttagaaa-cacaaccgtcaatataacctttggattgttgatctgtattagtagctcatgtggatatacttctcttcttctgcagGGAGCTTTGGATGGTGGTCTTGACATTCCTCACAGTGACAAGAGGTTTGCTGGGTTCAAGAAGGACGAGAAGCAGCTTGATTCTGATATTCACCGCAAGT

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G090738_T01 (Zea mays), 3'ss of exon 6
gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
       |   ||| |||  |||   |   | |   |||  ||||  |   | |   | | ||| || ||  |  |    ||||| |            | || |||   ||| |||| ||||||||||||||||| ||||| |||||||| || ||||| |||||||| ||| | |||||  | ||||| || |||||||| |||||| | || |
-----ttcccatttatctaatttccattgaactatactt--ttgttgtatgtttaaggaatatgtttttatggatagcattttaacacaa---------gatgcttgttgctgcagGGAGCTTTGGATGGTGGTCTAGATATTCCTCACAGCGATAAGAGGTTTGCTGGCTTCAAGAAGGATGATAAGCAGCTGGATGCTGATATCCACCGCAAGT

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM5G815894_T03 (Zea mays), 3'ss of exon 6
----------------------------------------gtattaacttgtt-tctctttttttgttgtgagtgctcttatttgtcat--tcttcttgagcaaa----tgcttatactggcaattctttaatatcc------ttttg--gttcgctg---tttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
                                        || ||   ||||  |    |  ||  | || |      || |||  |||   ||| |||  |||        ||||  || |   | ||  || ||       ||||   ||| | ||   | ||   ||| |||| |||||||||||||| || ||||| |||||||| || ||||| |||||||| ||| | |||||  ||||||| || |||||||| |||||  | || |
gtacatgtcttccttttgatgtcatgatgttatatttggggtgtttgtttgtagttagctcattaatagtaataataatttttttgcatgaacttgttgtacaaggcatcttttatggtgactggttttccatctctgtagttttttaacgtttgttgcattatgttgctgcagGGAGCTTTGGATGGTGGACTGGATATTCCTCACAGCGAGAAGAGGTTTGCTGGTTTCAAGAAGGATGACAAGCAGCTGGATGCTGATATCCATCGCAAGT

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA13G35580.2 (Glycine max), 3'ss of exon 6
gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
                               ||  |||    |        |||||     ||  || |  | |   |  |  ||| |         |   |||     | |  |||| ||| ||||||| ||| | ||||| |||||||| |||||||| |||||||||||  | |||||||| ||| | |||||||||||  | ||  | || |
-------------------------------gtaatctctaatactgcaactcttggtatgat-tttgttttagtggtggtcaaatct-------aataattgtgatggtttacagGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGCGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAAT

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA16G03170.1 (Glycine max), 3'ss of exon 6
gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaat-atccttttggttcgctgtttga-atctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
                                     | || | |||| || |    || |||   | |  |     ||   |  | |||   |||  |   | |||    | |  |||| ||| ||||||| ||| | ||||| ||||| ||||||||||| |||||||||||  | |||||||| ||| | |||||||||||  | ||  | || |
------------------------------------gtaatctatcatactgca-atgctaattggtgtgattttgttttaatggtgatcaaattgaataattttttattgtttacagGGAGCTCTGGATGGGGGTTTGGATATTCCTCATAGTGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTGCATCGCAAAT

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA07G06590.1 (Glycine max), 3'ss of exon 6
gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
                             |    || | ||     | | ||  | ||       || |  |     ||  | ||      ||   |   ||||     | |  |||| ||| ||||||| ||  | ||||| ||||||||||||||||| |||||||||||  | |||||||| ||| | |||||||| ||  | ||  |||| |
-----------------------------gtaatctatcatactgtaatgttaatcagtgtgattttgttttaatggttgatcaaa-----ttgaataatctgtgattgtttacagGGAGCTCTGGATGGGGGGTTGGATATTCCTCACAGTGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCAGAGGTTCATCGGAAAT

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 6
gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
             |    | |  || ||| | || |  |   ||| ||| || || |     || | | | ||   | ||| | ||               |||||        |||| ||| ||||||| ||  | ||||| ||||||||||| ||||| |||||||||||  | ||||| || ||| | |||||||||||  | ||  | || |
------------gtaatctatcatgctgtaa-tgttaatcagtgtgattttttttaa-tggttgatcaaattgaataatctgtgat---------------tgttta------cagGGAGCTCTGGATGGGGGGTTGGATATTCCTCACAGTGATAAGAGGTTTGCTGGGTTTGATAAGGAAAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAAT

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 3'ss of exon 6
gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
      ||     | ||  ||  ||   ||  || | ||  |||    | | ||||||    | ||||| |   |||    |  |  || |||   |||  |      | ||  |||| ||  ||||||||||  | || || |||||||||||||||||||||||||| |||   ||||| | |||||| |||||||| ||  | ||  | || |
-----tacactactgtccattcatgacatgcttgtttttggttgaatgtttacttgagtc--tacttattcc--caagc--tagaggtcatttaatttcaatt-----aactacagGGAGCACTGGATGGTGGCTTGGACATTCCTCACAGTGACAAGAGATTTGCTGGATTCTCAAAGGATAGCAAGCAGCTTGATGCCGAGGTTCATCGAAAGT

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv00s0174g00190.t01 (Vitis vinifera), 3'ss of exon 6
gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT----
  | | | |        || |||  || ||| |   |  |||         |||| | |    || |      ||| ||   |  | |||| ||  |||               |||| || ||||||||||| |||||||| ||||||||||||||||| |||||||| |||  || |||    |||||||||||||||||  | ||| | || |    
-aaatgattccagatgattctttaattttgaatttgcccattcaaaccatctcttcatcttgagcct----cagcagttacctgtt-tcctcttaattc--------------cagggagCATTGGATGGTGGACTTGATATTCCTCACAGTGACAAGAGGTTTGCTGGATTCAGCAGGGATGGTAAGCAACTTGATGCTGATGTTCACCGCAAGTATAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124950526|gb|EL025983.1|EL025983
EST:     TGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
genomic: TGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: gi|125315736|gb|EL329821.1|EL329821
EST:     CGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
genomic: CGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: gi|86038119|gb|DR333874.1|DR333874
EST:     TTGGACTTATCAGGAC-ACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGANNNGAGATTTGCT
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: gi|164065414|gb|ES173436.1|ES173436
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGC
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGC
EST: gi|125298797|gb|EL312882.1|EL312882
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: gi|164142488|gb|ES202890.1|ES202890
EST:     CTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
genomic: CTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: gi|164089022|gb|ES118289.1|ES118289
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTACGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTC
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTC
EST: gi|124870065|gb|EH954502.1|EH954502
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAG
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAG
EST: gi|164051634|gb|ES182175.1|ES182175
EST:     GGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGC
genomic: GGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGG-TGGTCTTGATATCCCTCACAGTGACAAGAGATTTGC
EST: gi|124743283|gb|EH834445.1|EH834445
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGG
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGG
EST: gi|86038116|gb|DR333871.1|DR333871
EST:     TTGGACTTATCAGGAC-ACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGC
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTT-GGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGC
EST: gi|125259494|gb|EL273579.1|EL273579
EST:     CAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAG
genomic: CAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAG
EST: gi|125043149|gb|EL115418.1|EL115418
EST:     GGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
genomic: GGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: gi|164237108|gb|ES062303.1|ES062303
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCT
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCT
EST: gi|164228852|gb|EL970520.1|EL970520
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGA
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGA
EST: gi|124730740|gb|EH822142.1|EH822142
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGT
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGT
EST: gi|124885529|gb|EH964431.1|EH964431
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCAC
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCAC
EST: gi|125105952|gb|EL159565.1|EL159565
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATAT
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATAT
EST: gi|86038132|gb|DR333887.1|DR333887
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: gi|164064740|gb|ES003340.1|ES003340
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGG
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGG
EST: gi|164075882|gb|ES187771.1|ES187771
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTG
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTG
EST: gi|125263094|gb|EL277179.1|EL277179
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCC-CACAGTG
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTG
EST: gi|86038117|gb|DR333872.1|DR333872
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: gi|124880602|gb|EH959504.1|EH959504
EST:     CCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
genomic: CCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: gi|124839604|gb|EH924043.1|EH924043
EST:     TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG                         GGTGCTTTGGATGGT
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
                  ctttaat  putative branch site (score: 4)
              aattctttaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG