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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcatatagctgagaccctcaacaatttgcataacaatttgctgtagtatcattatccaccagcaacttttcaaccttcaaattctgcagGTGCTTACCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGGGACACATTATGTACCATCTGGAAAGCTAGGTTC

Basic information

species Arabidopsis thaliana
transcript AT3G24360.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073000|gb|DR368757.1|DR368757
EST:     TGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTG                         GTGCTTACCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCAC
genomic: TGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGgtatgtttca ... aattctgcagGTGCTTACCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgctgtagtatcattatccaccagcaacttttcaaccttcaaattctgcagGTGCTTACCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGGGACACATTATGTACCATCTGGAAAGCTAGGTTC
            tatcattat  TA-rich tract