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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataatgaatcttctctacttattattcttcatttctttttgatttttgtcctaacaacaaacaacctctccaatttgaagGTGGCTATATCAGTTGAACCTCTGAAAGTTGAAAACTGGATTCTCCCAGAAATGCCAGGGCTTATCACCGACTTTCTAATCTCACTTGACGACCGATTCC

Basic information

species Arabidopsis thaliana
transcript AT3G23800.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23800.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA05G28400.1 (Glycine max), 3'ss of exon 5
-------------gtatataatgaatcttctctacttattattcttcatttctttttgatttttgtcc--taacaacaaacaacctctccaa-tttgaagGTGGCTATATCAGTTGAACCTCTGAAAGTTGAAAACTGGATTCTCCCAGAAATGCCAGGGCTTATCACCGACTTTCTAATCTCACTTGACGACCGATTCC
              | | ||| | |   |  ||| |  || | |  | |        |  |  ||  |  ||| |   |   ||    |  | |||| |||| || ||||||||  ||||  |||||||  ||||||||||||| |||||||||||||||||||| || || ||||| || || || || || || || |
atattcatactcattttgtaaagtagtctggctagtgtttgtgcagcttcaaccaaggcataatgatcaataatacttacagactagactgactttgcagGTTGCAATATCAGTGAAACCATTGAAAGTGCAAAACTGGATTCTTCCAGAAATGCCAGGGCTTATAACTGATTTTCTGATATCTCTCGATGATCGGTTTC

upper sequence: AT3G23800.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G11400.1 (Glycine max), 3'ss of exon 5
--gtatataatgaatct---tctctacttattattcttcatttctttttgatttttgtcctaacaacaaacaacctctccaa-----------tttgaagGTGGCTATATCAGTTGAACCTCTGAAAGTTGAAAACTGGATTCTCCCAGAAATGCCAGGGCTTATCACCGACTTTCTAATCTCACTTGACGACCGATTCC
   |  ||| | | | |   |    |  |  ||| | |   | |   || |     |   |||  |  || ||    | ||            |||| |||| || ||||||||  ||||  |||||||  ||||||||||||| ||||||||||| |||||||| || || ||||| || || ||||| || || || |
atatccatactcattttgtattgtcatctggtatgcgtttgtgcagcttcaaccaaggtataatgatcaataatacttacacactagactgactttgcagGTTGCAATATCAGTGAAACCATTGAAAGTGCAAAACTGGATTCTTCCAGAAATGCCTGGGCTTATAACTGATTTTCTGATATCTCTTGATGATCGGTTTC

upper sequence: AT3G23800.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA11G36670.1 (Glycine max), 3'ss of exon 5
gtatat-aatgaatcttctctacttattattcttcatttctttttgatttttgtcctaacaacaaacaacctc--tccaatttgaagGTGGCTATATCAGTTGAACCTCTGAAAGTTGAAAACTGGATTCTCCCAGAAATGCCAGGGCTTATCACCGACTTTCTAATCTCACTTGACGACCGATTCC
|||||| || | || ||   ||  ||||   | |   | ||| |  || | | ||      ||  |||  ||      | |||| |||| || ||||||||  |||| ||||||||  ||||||||||||| || |||||||| |||||||| || || ||| | || || ||||| || || || |
gtatatcaaaggatatttaatatctattcagcatatgtacttgtatatatatatcaatgatacttacagactaaacttactttgcagGTTGCCATATCAGTGAAACCACTGAAAGTGCAAAACTGGATTCTTCCTGAAATGCCTGGGCTTATAACTGATTTTTTGATTTCTCTTGATGATCGGTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcatttctttttgatttttgtcctaacaacaaacaacctctccaatttgaagGTGGCTATATCAGTTGAACCTCTGAAAGTTGAAAACTGGATTCTCCCAGAAATGCCAGGGCTTATCACCGACTTTCTAATCTCACTTGACGACCGATTCC
                       tcctaac  putative branch site (score: 1)
                                       cctctcc  putative PPT
     atttctttttgatttt  TA-rich tract