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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttaggttctttgttttccatagaaggcaatatgtctttagtgtctcattttactatccaaaaacttgcagCTAACAATCTTGGAGTGGACGCGGTTTTCGTTTACACAACGAGCGGACACATGGCATCACTGGTCTCCCGATGTCGCCCGGACTGCCCGATCTTTGCTTT

Basic information

species Arabidopsis thaliana
transcript AT3G22960.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164064114|gb|ES130651.1|ES130651
EST:     TTTTCAGACAAAATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAATGG                         CTAACAATCTTGGAGTGGACGCGGTTTTCGTTTACACAACGAGCGGACACA
genomic: TTTTCAGACAAAATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAATGGgtaaatttag ... aaacttgcagCTAACAATCTTGGAGTGGACGCGGTTTTCGTTTACACAACGAGCGGACACA
EST: gi|125184904|gb|EL199858.1|EL199858
EST:     ATTTTCAGACAAAATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAATGG                         CTAACAATCCTTGGAGTGGACGCGGTTTTCGTTTACA
genomic: ATTTTCAGACAAAATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAATGGgtaaatttag ... aaacttgcagCTAACAATC-TTGGAGTGGACGCGGTTTTCGTTTACA
EST: gi|124911375|gb|EH985455.1|EH985455
EST:     CAGACAAAATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAAATGG                         CTAACAATCTTGGAGTGGACG
genomic: CAGACAAAATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAA-TGGgtaaatttag ... aaacttgcagCTAACAATCTTGGAGTGGACG
EST: gi|86076341|gb|DR372098.1|DR372098
EST:     ATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAATGG                         CTAACAATCTTGGAGTGGACGCGGTTTTCGTTTACACAACGAGCGGACACA
genomic: ATCTCAGAAGAGATCTGTAACTCAGCTGCTAAAATGGgtaaatttag ... aaacttgcagCTAACAATCTTGGAGTGGACGCGGTTTTCGTTTACACAACGAGCGGACACA
EST: gi|124908643|gb|EH982723.1|EH982723
EST:     AGAGATCTGTAACTCAGCTGCTAAAATGG                         CTAACAATCTTGGAGTGGACGCGGTTTTCGTTTACACAACGAGCGGACACA
genomic: AGAGATCTGTAACTCAGCTGCTAAAATGGgtaaatttag ... aaacttgcagCTAACAATCTTGGAGTGGACGCGGTTTTCGTTTACACAACGAGCGGACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatagaaggcaatatgtctttagtgtctcattttactatccaaaaacttgcagCTAACAATCTTGGAGTGGACGCGGTTTTCGTTTACACAACGAGCGGACACATGGCATCACTGGTCTCCCGATGTCGCCCGGACTGCCCGATCTTTGCTTT
                               attttactat  TA-rich tract