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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacaactttggttgtctaacttaggatgttccatgttttcggtgtattcatcttctcgtttaacaaaacagGCGGTCTACAACGCAAACAAGCTGTCGGAACTGGTACAGAAGAGGATGAAATTGCAGAATTGGCTTGATTACTATCAAAACAAACACTCTAGGAATCCAT

Basic information

species Arabidopsis thaliana
transcript AT3G21620.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21620.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 5
--------------------gtactacaactttggt-tgtctaacttaggatgttccatgttttcggtgtattcatcttctcgtttaacaaa-----acagGCGGTCTACAACGCAAACAAGCTGTCGGAACTGGTACAGAAGAGGATGAAATTGCAGAATTGGCTTGATTACTATCAAAACAAACACTCTAGGAATCCAT
                     ||||| ||        | | |    |   |||    |    | |  |||  | ||| | || ||| |   |     | |||  ||||| || ||||| |||||     |  ||||  |  ||| || |||| |||||||||||||||||||||||||    ||| |    || ||| |||
ttagttttaactgcttatcgttactaaaaaaaaaaaatctatgctctgatatggcttaccactaccatgttcttatcat-tcatttcatggactggtatagGTTGTCTATAATGCAAATAAGCTTGATAAGATGGTCAAAGAGAAGAAGAAAATGCAGAATTGGCTTGATTACTATCAGCTGAAATATGAAAGAAATACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttaggatgttccatgttttcggtgtattcatcttctcgtttaacaaaacagGCGGTCTACAACGCAAACAAGCTGTCGGAACTGGTACAGAAGAGGATGAAATTGCAGAATTGGCTTGATTACTATCAAAACAAACACTCTAGGAATCCAT
                                          tttaacaaaa  TA-rich tract