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gttagtattgggcctgtaattttgatttatatctttcgagttcaaagaaatattacttacaactgttcatttatcacagAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATG
species | Arabidopsis thaliana |
transcript | AT3G20290.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCG AAAAAGAAGCATTCATCAAAGTCGAGTGEST: gi|124796438|gb|EH886117.1|EH886117
genomic: TCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCGgttagtattg ... tttatcacagAAAAAGAAGCATTCATCAAAGTCGAGTG
EST: TCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCG AAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATEST: gi|116430168|gb|EG472760.1|EG472760
genomic: TCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCGgttagtattg ... tttatcacagAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATAT
EST: TCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCG AAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATGEST: gi|125244971|gb|EL259056.1|EL259056
genomic: TCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCGgttagtattg ... tttatcacagAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATG
EST: CAAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCG AAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAEST: gi|125322593|gb|EL336678.1|EL336678
genomic: C-AAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCGgttagtattg ... tttatcacagAAAAA-GAAGCATTCATCAAAGTCGAGTGATCCTAATATGA
EST: GTATTAATGGCG -AAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATGEST: gi|125046118|gb|EL118387.1|EL118387
genomic: GTATTAATGGCGgttagtattg ... tttatcacagAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATG
EST: TCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCG AAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGA
genomic: TCAAAAATATCAATCCTCCTACCATGGAAGGTCTGGGTGTATTAATGGCGgttagtattg ... tttatcacagAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGA
atttatatctttcgagttcaaagaaatattacttacaactgttcatttatcacagAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATG
tacttac putative branch site (score: 1)
ttcattt putative PPT
aaagaaatattactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtattgggcctgtaattttgatttatatctttcgagttcaaagaaatattacttacaactgttcatttatcacagAAAAAGAAGCATTCATCAAAGTCGAGTGATCCTAATATGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC