1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtaaagaggtggtttccgtttaagttttctccaatgattattcgcaacactaaaaaaaaacttttcgcattggacacagTTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTTGACTCACTAACTTA
species | Arabidopsis thaliana |
transcript | AT3G18680.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATCCATTTTTCACCACCGATACTGCAGCGGCTCTTCGATGTGCTGAAA TTAATGCAGAAGTAGTGCTGAAAGCEST: gi|116478458|gb|EG521050.1|EG521050
genomic: CAATCCATTTTTCACCACCGATACTGCAGCGGCTCTTCGATGTGCTGAAAgtaagtaaag ... ttggacacagTTAATGCAGAAGTAGTGCTGAAAGC
EST: CAATCCATTTTTCACCACCGATACTGCAGCGGCTCTTCGATGTGCTGAAA TTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACGEST: gi|116478459|gb|EG521051.1|EG521051
genomic: CAATCCATTTTTCACCACCGATACTGCAGCGGCTCTTCGATGTGCTGAAAgtaagtaaag ... ttggacacagTTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACG
EST: CAATCCATTTTTCACCACCGATACTGCAGCGGCTCTTCGATGTGCTGAAA TTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACGEST: gi|86076402|gb|DR372159.1|DR372159
genomic: CAATCCATTTTTCACCACCGATACTGCAGCGGCTCTTCGATGTGCTGAAAgtaagtaaag ... ttggacacagTTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACG
EST: CAATCCATTTTTCACCACCGATACTGCAGCGGCTCTTCGATGTGCTGAAA TTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACG
genomic: CAATCCATTTTTCACCACCGATACTGCAGCGGCTCTTCGATGTGCTGAAAgtaagtaaag ... ttggacacagTTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACG
ttttctccaatgattattcgcaacactaaaaaaaaacttttcgcattggacacagTTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTTGACTCACTAACTTA
cactaaa putative branch site (score: 2)
actaaaaaaaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaagaggtggtttccgtttaagttttctccaatgattattcgcaacactaaaaaaaaacttttcgcattggacacagTTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTTGACTCACTAACTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA