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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatccgacctccttatgtagcgcatgtcatgtttcaaatctacccaacctgcaatagaatggtctgcatgtatctaaattatgatgtaccttataagctagaagcttgtatatgttgcagGTTAGAATGCTCACTGAAGCTTGGGAGTACACATCTGCTGATCATTTTCTCCACTGCCTCCCACTACATCATGTTCATGGGCTTTTCAACGCTTTATTTG

Basic information

species Arabidopsis thaliana
transcript AT3G16170.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G21840.1 (Glycine max), 3'ss of exon 5
---------------------------------------------------------gtatatatccgacctccttatgtagcgcatgtcatgtt---tcaaatctacccaacctgcaatagaatggtctgcatgtatctaaattatgatgtaccttataagctagaagcttgtatatgttgcagGTTAGAATGCTCACTGAAGCTTGGGAGTACACATCTGCTGATCATTTTCTCCACTGCCTCCCACTACATCATGTTCATGGGCTTTTCAACGCTTTATTTG
                                                           | | |       |  | |||||       |||  |    |  ||||        ||| |  |     |||      ||| |   |  | || |    | |    || || ||||| |   ||  ||||   ||   | ||  |||| ||||||||||||||||||||||| ||||| || || || ||||||||||                              
gtatgctctgtgattaactctagttacatttaatactttgattatcaaatcatgcacacacaaagtactgtttatgatgtaattttaatcaaatgcaatttaatccttgttgtctggagcaaggcagtccattcctattttgttattaattttgtatttttttta-aatcttgtcttgatttaagGTCCAAACTTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATC------------------------------

upper sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA07G02180.2 (Glycine max), 3'ss of exon 5
gtatatatccgacctccttatgtagcgcatgtcatgtttcaaatctacccaacctgcaatagaatggtctgcatgtatctaaattatgatgtaccttataagctagaagcttgtatatgttgcagGTTAGAATGCTCACTGAAGCTTGGGAGTACACATCTGCTGATCATTTTCTCCACTGCCTCCCACTACATCATGTTCATGGGCTTTTCAACGCTTTATTTG
                       | |  |||  || |    ||||         || |  |     |||      ||| |   |  | || |    | |    | ||| ||||| |   ||  ||||   ||   | ||  |||||||||||||| |||||||||| || ||||| || || || ||||||||||                              
---------------------taatcaaatgcaattt----aatccttgttgagtggagcatggcagtccattcctatttggttattaattttgtatttgtttttgaatcttgtcttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgtatctaaattatgatgtaccttataagctagaagcttgtatatgttgcagGTTAGAATGCTCACTGAAGCTTGGGAGTACACATCTGCTGATCATTTTCTCCACTGCCTCCCACTACATCATGTTCATGGGCTTTTCAACGCTTTATTTG
      atctaaa  putative branch site (score: 3)
     tatctaaattatgat  TA-rich tract