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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttttcttttataatcaaaaatcaaatcatggtttgtgaccaaatagttatttgtattaatttgacacttttatctttcctatgaatcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACTTCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGA

Basic information

species Arabidopsis thaliana
transcript AT3G15840.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15840.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA07G03360.1 (Glycine max), 3'ss of exon 5
gttcgttttcttttataatcaaaaatcaaatcatggtttgtgaccaaatagttatttgtattaatttgacacttttatctttcctatgaatcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACTTCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGA
       |  |||  || ||     ||     ||  ||||    ||||   | |||    ||  | |  |    || |||||  | ||         ||||| |||| ||||| || ||||| || ||||| || || ||||| |||||||| ||||| ||||||||||| ||||||  ||  |||||||| || |||||
------gtagtttggtattcttgtttcttgatatattttgctgacaaa--atcattcagttttttcttgctaacttctcttttttgtg---------cagCTTTGAACTTGATCTTTTCATTTACAAATGGAGTAGACTGGGATGGTCCATATAGACTACAGTTTCAAGTTCCCAAGGCATTACAAAACAAGCCAATTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124911949|gb|EH986029.1|EH986029
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGT
EST: gi|47828825|gb|CK118509.1|CK118509
EST:     CANAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGAT
EST: gi|47828827|gb|CK118511.1|CK118511
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|116420760|gb|EG463352.1|EG463352
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|47828708|gb|CK118392.1|CK118392
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|116441102|gb|EG483694.1|EG483694
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|125246616|gb|EL260701.1|EL260701
EST:     CAAAGCCGATTCCCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCG
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCG
EST: gi|124937966|gb|EL014641.1|EL014641
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTC
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTC
EST: gi|47831953|gb|CK121637.1|CK121637
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|47830759|gb|CK120443.1|CK120443
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|47832287|gb|CK121971.1|CK121971
EST:     CANAGCCGATTCTCCGATATACACTATGCAGANTTGCATTCCTAAGCATG                         CTGNGAATTTGATATTCTCATTCACTAA
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAA
EST: gi|125091309|gb|EL149132.1|EL149132
EST:     ACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: ACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|116479685|gb|EG522277.1|EG522277
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|116479684|gb|EG522276.1|EG522276
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|47828422|gb|CK118106.1|CK118106
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|116441100|gb|EG483692.1|EG483692
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
EST: gi|116428971|gb|EG471563.1|EG471563
EST:     CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATG                         CTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT
genomic: CAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCATGgttcgttttc ... tcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatagttatttgtattaatttgacacttttatctttcctatgaatcattatcagCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACTTCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGA
      ttatttgtattaattt  TA-rich tract