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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccaaccatgagttatatatatcttcattcctttgtcacaggtcttgatataatatatcataatctctagcttaacttgaaaatgttatttgtggtttgtgtcagTCAAAGTTGGGATAGGAGGTTTCAGTATGGGTGCAGCAATAGCTCTCTACTCCACGACGTGCTACGCTCTTGGACGTTATGGAACCGGACATGCTTATAC

Basic information

species Arabidopsis thaliana
transcript AT3G15650.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15650.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA15G01350.1 (Glycine max), 3'ss of exon 6
-gtaagccaaccatgagttatatatatcttcattcctttgtcacaggtcttgatataatatatcataatctctagcttaacttgaaaatgttatttgtggtttgtgtcagTCAAAGTTGGGATAGGAGGTTTCAGTATGGGTGCAGCAATAGCTCTCTACTCCACGACGTGCTACGCTCTTGGACGTTATGGAACCGGACATGCTTATAC
  | || |   | |   | | | |||||   |||  | | |   ||   |||||||  |  |   | ||   |   | |  || | ||| | |||       |||| |||| |||||||| || ||||| ||||| |||||||||||||||||||| |||||  | || || |  ||  | ||| | |||||||  ||   | | ||  |
gcttagtctgtcttct-tgaaacatatcca-atttgtgtattgaagtaattgatatcttgaagt-tgatgattcaatcattttaacaat-tcatta------tgtgacagTGAAAGTTGGTATTGGAGGCTTCAGCATGGGTGCAGCAATAGCTCTGTACTCTTCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATTCCATACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125145389|gb|EL180586.1|EL180586
EST:     TGCTAACCTATTATCTGCTGAGCCAACAGATG                         TCAAAGTTGGGATAGGAGGTTTCAGTATGGGTAGCAGCAATAGCTCTCTAC
genomic: TGCTAACCTATTATCTGCTGAGCCAACAGATGgtaagccaac ... tttgtgtcagTCAAAGTTGGGATAGGAGGTTTCAGTATGGGT-GCAGCAATAGCTCTCTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatatatcataatctctagcttaacttgaaaatgttatttgtggtttgtgtcagTCAAAGTTGGGATAGGAGGTTTCAGTATGGGTGCAGCAATAGCTCTCTACTCCACGACGTGCTACGCTCTTGGACGTTATGGAACCGGACATGCTTATAC
                   gcttaac  putative branch site (score: 3)
                          ttgaaaatgttattt  TA-rich tract