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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgcgtttttttggattactggcaaacgaatcactctcttgttttctcttgttcaccctctaatcgtcgtatctgaatttcagGTAATCCGAGGGTCACACCTGAGGTCACTAGAGATGTGTGCTTGTTGGCTAGAATGATGGCTGCCAATCTCTACTATAACCAAATCGAGAATCTGATGTT

Basic information

species Arabidopsis thaliana
transcript AT3G14940.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14940.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G110714_T01 (Zea mays), 3'ss of exon 4
--------------------------------gtacatgcgtttttttggattactggcaaacgaatcactctcttgttttctcttgttcaccctctaatcgtcgtatctgaatttcagGTAATCCGAGGGTCACACCTGAGGTCACTAGAGATGTGTGCTTGTTGGCTAGAATGATGGCTGCCAATCTCTACTATAACCAAATCGAGAATCTGATGTT
                                ||| ||  | | |  || || |            ||||      |   |  |   |  | |    ||  |  ||   |||    |||| ||||| || ||||| || ||||| || || ||||| |||||||||||||||||||||||||| ||| | ||  ||  ||| || ||  | ||||||||
gtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcatgcaactgtagttcacaagaaagaagtg-caaatataactctgaactgatgtccatga----cagGGAATCCAAGAGTCACGCCAGAGGTTACAAGGGATGTATGCTTGTTGGCTAGAATGATGGCTGCTAATTTGTATAATGCCCAGATAGAAGACCTGATGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073317|gb|DR369074.1|DR369074
EST:     CAATGCCCCATTGATTCAATTCTCTTCGTGGATGGGCGGTGATCGTGATG                         GTAATCCGAGGGTCACACCTGAGGTCACTAGAGATGTGTGCTTGTTGGCTA
genomic: CAATGCCCCATTGATTCAATTCTCTTCGTGGATGGGCGGTGATCGTGATGgtacatgcgt ... tgaatttcagGTAATCCGAGGGTCACACCTGAGGTCACTAGAGATGTGTGCTTGTTGGCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcactctcttgttttctcttgttcaccctctaatcgtcgtatctgaatttcagGTAATCCGAGGGTCACACCTGAGGTCACTAGAGATGTGTGCTTGTTGGCTAGAATGATGGCTGCCAATCTCTACTATAACCAAATCGAGAATCTGATGTT
                             ctctaat  putative branch site (score: 3)
          ttgtttt  TA-rich tract